<<< Full experiment listing

PXD014814

PXD014814 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleThermococcus kodakarensis proteins expressed at various temperatures reveals changes in RNA modifications
DescriptionThermococcus kodakarensis is a thermophilic archaea used in this study to determine how changes in growth temperature affect protein expression. This organism was chosen, in part, due to the simplified proteome and potential protein stability gained when analyzing proteins at room temperature. Two temperatures were used as well as one knockout cell line to determine the differences in protein expression. Specifically, changes in protein expression levels were used in conjunction with other data to determine the changing levels of RNA modification based on expression temperature.
HostingRepositoryPRIDE
AnnounceDate2020-02-18
AnnouncementXMLSubmission_2020-07-23_23:04:58.xml
DigitalObjectIdentifierhttp://dx.doi.org/10.6019/PXD014814
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterMichaella Levy
SpeciesList scientific name: Thermococcus kodakarensis KOD1; NCBI TaxID: 69014;
ModificationListacetylated residue; monohydroxylated residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02019-07-29 09:09:07ID requested
12020-02-17 23:48:41announced
22020-07-23 23:04:59announced2020-07-24: Updated publication reference for PubMed record(s): 32555463.
Publication List
Sas-Chen A, Thomas JM, Matzov D, Taoka M, Nance KD, Nir R, Bryson KM, Shachar R, Liman GLS, Burkhart BW, Gamage ST, Nobe Y, Briney CA, Levy MJ, Fuchs RT, Robb GB, Hartmann J, Sharma S, Lin Q, Florens L, Washburn MP, Isobe T, Santangelo TJ, Shalev-Benami M, Meier JL, Schwartz S, Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping. Nature, 583(7817):638-643(2020) [pubmed]
Keyword List
submitter keyword: Proteomics, QExactive Plus, theromphile, Thermococcus kodakarensis
Contact List
Laurence Florens
contact affiliationStowers Institute for Medical Research
contact emaillaf@stowers.org
lab head
Michaella Levy
contact affiliationStowers Institute for Medical Research
contact emailmly@stowers.org
dataset submitter
Full Dataset Link List
Dataset FTP location
PRIDE project URI
Repository Record List
[ + ]