PXD013655-1

PXD013655 is an original dataset announced via ProteomeXchange.

Title	Systems Biology of Lipid Accumulating Organisms
Description	Characterization of microbial communities at the genomic, transcriptomic, proteomic and metabolomic levels, with a special interest on lipid accumulating bacterial populations, which are naturally enriched in biological wastewater treatment systems and may be harnessed for the conversion of mixed lipid substrates (wastewater) into biodiesel. The project aims to elucidate the genetic blueprints and the functional relevance of specific populations within the community. It focuses on within-population genetic and functional heterogeneity, trying to understand how fine-scale variations contribute to differing lipid accumulating phenotypes. Insights from this project will contribute to the understanding the functioning of microbial ecosystems, and improve optimization and modeling strategies for current and future biological wastewater treatment processes. This project contains datasets derived from the same biological wastewater treatment plant. The data includes metagenomes, metatranscriptomes, metaproteomes and organisms isolated in pure cultures. Characterization of microbial communities at the genomic, transcriptomic, proteomic and metabolomic levels, with a special interest on lipid accumulating bacterial populations, which are naturally enriched in biological wastewater treatment systems and may be harnessed for the conversion of mixed lipid substrates (wastewater) into biodiesel. The project aims to elucidate the genetic blueprints and the functional relevance of specific populations within the community. It focuses on within-population genetic and functional heterogeneity, trying to understand how fine-scale variations contribute to differing lipid accumulating phenotypes. Insights from this project will contribute to the understanding the functioning of microbial ecosystems, and improve optimization and modeling strategies for current and future biological wastewater treatment processes. This project contains datasets derived from the same biological wastewater treatment plant. The data includes metagenomes, metatranscriptomes, metaproteomes and organisms isolated in pure cultures.
HostingRepository	PRIDE
AnnounceDate	2020-08-19
AnnouncementXML	Submission_2020-08-18_23:03:59.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD013655
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Benoit Kunath
SpeciesList	scientific name: wastewater metagenome; NCBI TaxID: 527639;
ModificationList	Oxidation; Carbamidomethyl
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2019-04-29 01:04:46	ID requested
⏵ 1	2020-08-18 23:03:59	announced
2	2022-02-21 10:00:07	announced	2022-02-21: Updated publication reference for PubMed record(s): 33139880.
3	2022-02-21 10:01:25	announced	2022-02-21: Updated publication reference for PubMed record(s): 33139880. 2022-02-21: Updated publication reference for PubMed record(s): 33139880, 33077707.

Dataset with its publication pending

submitter keyword: metaproteomics

Activated sludge

Time Series

Lipid Accumulation

CRISPR

Metagenomics

Phages

Plamids

Paul Wilmes
contact affiliation	Eco-Systems Biology group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg
contact email	paul.wilmes@uni.lu
lab head
Benoit Kunath
contact affiliation	LCSB
contact email	benoit.kunath@uni.lu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/08/PXD013655

PRIDE project URI

• PRIDE
  1. PXD013655
     1. Label: PRIDE project
     2. Name: Systems Biology of Lipid Accumulating Organisms