PXD013180 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Identification of proteins able to interact with the WD40 domain of ATG16L1 |
Description | Cell lines of different origin (JAR (choriocarcinoma) and THP1 (monocytes, both untreated and activated by LPS/PMA)) expressing the WD40 domain of ATG16L1 fused to GST were lysed and the resulting supernatants subjected to agarose-GSH immunoprecipitation. Co-precipitating proteins were resolved by PAGE and the specific bands excised for identification using an LTQ-Orbitrap Velos device. |
HostingRepository | PRIDE |
AnnounceDate | 2019-03-21 |
AnnouncementXML | Submission_2019-03-21_10:12:27.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD013180 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Nieves Ibarrola |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | L-cysteine residue; L-arginine residue; residues isobaric at 113.084064 Da; L-histidine residue; residues isobaric at 128.058578 Da; Oxidation; L-lysine residue; L-tyrosine residue; Acetyl; L-proline residue; Carbamidomethyl; residues isobaric at 71.037114 Da |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-03-21 07:05:30 | ID requested | |
⏵ 1 | 2019-03-21 10:12:27 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Human, cell line, ATG16L1, autophagy |
Contact List
Felipe X. Pimentel-Muiños |
contact affiliation | Instituto de Biología Molecular y Celular del Cáncer (IBMCC), Centro de Investigación del Cáncer (CSIC-USAL). Universidad de Salamanca, Campus Unamuno. Salamanca 37007. Spain. |
contact email | fxp@usal.es |
lab head | |
Nieves Ibarrola |
contact affiliation | Center for Cancer Research |
contact email | nibarrola@usal.es |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD013180 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD013180
- Label: PRIDE project
- Name: Identification of proteins able to interact with the WD40 domain of ATG16L1