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PXD013010-1

PXD013010 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleLC-MSMS of HSV-1 infected HFFs
DescriptionHerpes simplex virus 1 (HSV-1) is the causative agent of the common cold sores and life-threatening disease. Here, we characterize the full complement of viral gene expression during lytic infection using an integrative Omics approach. This revealed hundreds of novel viral gene products arising from differential usage of transcription and translation start sites. We classify these into viral gene modules and provide a comprehensive state-of-the-art annotation of all HSV-1 gene products.
HostingRepositoryPRIDE
AnnounceDate2020-05-22
AnnouncementXMLSubmission_2020-05-21_23:35:32.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterFlorian Erhard
SpeciesList scientific name: Human herpesvirus 1 (strain 17) (HHV-1) (Human herpes simplex virus 1); NCBI TaxID: 10299; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListiodoacetamide derivatized residue
InstrumentOrbitrap Fusion
Dataset History
RevisionDatetimeStatusChangeLog Entry
02019-03-07 23:43:01ID requested
12020-05-21 23:35:34announced
Publication List
Whisnant AW, Jürges CS, Hennig T, Wyler E, Prusty B, Rutkowski AJ, L'hernault A, Djakovic L, Göbel M, Döring K, Menegatti J, Antrobus R, Matheson NJ, Künzig FWH, Mastrobuoni G, Bielow C, Kempa S, Liang C, Dandekar T, Zimmer R, Landthaler M, Grässer F, Lehner PJ, Friedel CC, Erhard F, Dölken L, Integrative functional genomics decodes herpes simplex virus 1. Nat Commun, 11(1):2038(2020) [pubmed]
Keyword List
curator keyword: Biomedical
submitter keyword: LC-MSMS, HSV-1, HFF, SILAC
Contact List
Lars Dölken
contact affiliationInstitute for Virology and Immunobiology, Julius-Maximilians-University Würzburg, Versbacher Straße 7, 97078 Würzburg, Germany
contact emaillars.doelken@uni-wuerzburg.de
lab head
Florian Erhard
contact affiliationInstitut für Virologie und Immunbiologie, Julius-Maximilians-Universität Würzburg
contact emailFlorian.Erhard@uni-wuerzburg.de
dataset submitter
Full Dataset Link List
Dataset FTP location
PRIDE project URI
Repository Record List
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