PXD013010
PXD013010 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | LC-MSMS of HSV-1 infected HFFs |
Description | Herpes simplex virus 1 (HSV-1) is the causative agent of the common cold sores and life-threatening disease. Here, we characterize the full complement of viral gene expression during lytic infection using an integrative Omics approach. This revealed hundreds of novel viral gene products arising from differential usage of transcription and translation start sites. We classify these into viral gene modules and provide a comprehensive state-of-the-art annotation of all HSV-1 gene products. |
HostingRepository | PRIDE |
AnnounceDate | 2020-05-22 |
AnnouncementXML | Submission_2020-05-21_23:35:32.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Florian Erhard |
SpeciesList | scientific name: Human herpesvirus 1 (strain 17) (HHV-1) (Human herpes simplex virus 1); NCBI TaxID: 10299; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | iodoacetamide derivatized residue |
Instrument | Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2019-03-07 23:43:01 | ID requested | |
⏵ 1 | 2020-05-21 23:35:34 | announced |
Publication List
Whisnant AW, J, ü, rges CS, Hennig T, Wyler E, Prusty B, Rutkowski AJ, L'hernault A, Djakovic L, G, ö, bel M, D, ö, ring K, Menegatti J, Antrobus R, Matheson NJ, K, ü, nzig FWH, Mastrobuoni G, Bielow C, Kempa S, Liang C, Dandekar T, Zimmer R, Landthaler M, Gr, ä, sser F, Lehner PJ, Friedel CC, Erhard F, D, ö, lken L, Integrative functional genomics decodes herpes simplex virus 1. Nat Commun, 11(1):2038(2020) [pubmed] |
Keyword List
curator keyword: Biomedical |
submitter keyword: LC-MSMS, HSV-1, HFF, SILAC |
Contact List
Lars Dölken | |
---|---|
contact affiliation | Institute for Virology and Immunobiology, Julius-Maximilians-University Würzburg, Versbacher Straße 7, 97078 Würzburg, Germany |
contact email | lars.doelken@uni-wuerzburg.de |
lab head | |
Florian Erhard | |
contact affiliation | Institut für Virologie und Immunbiologie, Julius-Maximilians-Universität Würzburg |
contact email | Florian.Erhard@uni-wuerzburg.de |
dataset submitter |
Full Dataset Link List
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD013010 |
PRIDE project URI |
Repository Record List
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