PXD011647 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | LC-MS/MS of Human Plasma Peptides |
Description | Discrepancies in blood sample collection and processing could have a significant impact on levels of peptides in the blood, thus sample quality control is critical for successful biomarker identification and validation. In this study, we analyzed the effects of several pre-analytical processing conditions, including different storage times and temperatures of blood or plasma samples and different centrifugation forces, on the levels of peptides in human plasma samples using ethylenediaminetetraacetic acid (EDTA) as an anticoagulant. Both time and temperature were identified as major factors for peptide variation. |
HostingRepository | PRIDE |
AnnounceDate | 2022-02-15 |
AnnouncementXML | Submission_2022-02-15_09:10:18.241.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Li-Rong Yu |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-11-09 08:23:06 | ID requested | |
⏵ 1 | 2022-02-15 09:10:19 | announced | |
Publication List
Cao Z, Kamlage B, Wagner-Golbs A, Maisha M, Sun J, Schnackenberg LK, Pence L, Schmitt TC, Daniels JR, Rogstad S, Beger RD, Yu LR, An Integrated Analysis of Metabolites, Peptides, and Inflammation Biomarkers for Assessment of Preanalytical Variability of Human Plasma. J Proteome Res, 18(6):2411-2421(2019) [pubmed] |
Keyword List
submitter keyword: Human, plasma, peptides, LC-MS/MS |
Contact List
Li-Rong Yu |
contact affiliation | Biomarkers and Alternative Models Branch Division of Systems Biology National Center for Toxicological Research U.S. Food and Drug Administration 3900 NCTR Rd., HFT-233 Jefferson, AR 72079 USA |
contact email | lirong.yu@fda.hhs.gov |
lab head | |
Li-Rong Yu |
contact affiliation | National Center for Toxicological Research, FDA |
contact email | lirong.yu@fda.hhs.gov |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD011647 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD011647
- Label: PRIDE project
- Name: LC-MS/MS of Human Plasma Peptides