PXD009105 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Metaproteome analysis of hydrothermal vent chimney biofilms |
Description | At hydrothermal vent sites, chimneys consisting of sulfides, sulfates, and oxides are formed upon contact of reduced hydrothermal fluids with oxygenated seawater. The walls and surfaces of these chimneys are an important habitat for vent-associated microorganisms. We used community proteogenomics to investigate and compare the composition and in situ protein expression of microbial communities colonizing two actively venting hydrothermal chimneys from the Manus Basin back-arc spreading center (Papua New Guinea). |
HostingRepository | PRIDE |
AnnounceDate | 2018-04-27 |
AnnouncementXML | Submission_2018-04-27_04:12:50.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD009105 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Stephanie Markert |
SpeciesList | scientific name: Archaea; NCBI TaxID: 2157; scientific name: Eukaryota (eucaryotes); NCBI TaxID: 2759; scientific name: Viruses; NCBI TaxID: 10239; scientific name: Bacteria; NCBI TaxID: 2; |
ModificationList | Oxidation |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-03-05 01:17:59 | ID requested | |
⏵ 1 | 2018-04-27 04:12:51 | announced | |
Publication List
Pjevac P, Meier DV, Markert S, Hentschker C, Schweder T, Becher D, Gruber-Vodicka HR, Richter M, Bach W, Amann R, Meyerdierks A, Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys. Front Microbiol, 9():680(2018) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Hydrothermal vents, chimneys, LC-MSMS, metaproteome |
Contact List
Stephanie Markert |
contact affiliation | Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany |
contact email | stephanie.markert@uni-greifswald.de |
lab head | |
Stephanie Markert |
contact affiliation | University of Greifswald |
contact email | stephanie.markert@uni-greifswald.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/04/PXD009105 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD009105
- Label: PRIDE project
- Name: Metaproteome analysis of hydrothermal vent chimney biofilms