PXD008840 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | A proteomic landscape of diffuse-type gastric cancer |
Description | Here we present a dataset from 84 DGC patients with paired tumor and nearby tissue. Tumors and their nearby tissues were evaluated by pathologists. Nearby tissues were designated as non-cancerous and were greater than 5 cm away from the surgery margin. Hematoxylin and eosin (H&E) stained sections were examined by two expert gastrointestinal pathologists (Z.L. and Yumei Lai) independently to confirm: (1) diffuse type (Lauren type); (2) >50% tumor cell nuclei; (3) <20% necrosis in tumor tissue; (4) no tumor cells in nearby tissue. |
HostingRepository | PRIDE |
AnnounceDate | 2018-02-09 |
AnnouncementXML | Submission_2018-02-09_11:46:46.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Xia Xia |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive; LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-02-02 00:37:19 | ID requested | |
⏵ 1 | 2018-02-09 11:46:47 | announced | |
2 | 2018-02-14 02:01:35 | announced | Updated project metadata. |
3 | 2018-08-29 04:05:15 | announced | Updated project metadata. |
4 | 2018-08-29 04:06:09 | announced | Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Proteome, gastric cancer |
Contact List
Jun Qin |
contact affiliation | National Center for Protein Sciences (The PHOENIX center, Beijing) |
contact email | jqin@bcm.edu |
lab head | |
Xia Xia |
contact affiliation | National Center for Protein Sciences |
contact email | xiax03@126.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/02/PXD008840 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD008840
- Label: PRIDE project
- Name: A proteomic landscape of diffuse-type gastric cancer