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DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2018-02-14
  • AnnouncementXML: Submission_2018-02-14_02:01:34.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Unsupported dataset by repository
  • PrimarySubmitter: Xia Xia
  • Title: A proteomic landscape of diffuse-type gastric cancer
  • Description: Here we present a dataset from 84 DGC patients with paired tumor and nearby tissue. Tumors and their nearby tissues were evaluated by pathologists. Nearby tissues were designated as non-cancerous and were greater than 5 cm away from the surgery margin. Hematoxylin and eosin (H&E) stained sections were examined by two expert gastrointestinal pathologists (Z.L. and Yumei Lai) independently to confirm: (1) diffuse type (Lauren type); (2) >50% tumor cell nuclei; (3) <20% necrosis in tumor tissue; (4) no tumor cells in nearby tissue.
  • SpeciesList: scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
  • ModificationList: No PTMs are included in the dataset
  • Instrument: Q Exactive; LTQ Orbitrap

Dataset History

VersionDatetimeStatusChangeLog Entry
02018-02-02 00:37:19ID requested
12018-02-09 11:46:47announced
22018-02-14 02:01:35announcedUpdated project metadata.

Publication List

  1. Dataset with its publication pending

Keyword List

  1. curator keyword: Biomedical
  2. submitter keyword: Proteome, gastric cancer

Contact List

    Jun Qin
    • contact affiliation: National Center for Protein Sciences (The PHOENIX center, Beijing)
    • contact email: jqin@bcm.edu
    • lab head:
    Xia Xia
    • contact affiliation: National Center for Protein Sciences
    • contact email: xiax03@126.com
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List
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