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PXD008840

DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2018-02-14
  • AnnouncementXML: Submission_2018-08-29_04:06:07.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Unsupported dataset by repository
  • PrimarySubmitter: Xia Xia
  • Title: A proteomic landscape of diffuse-type gastric cancer
  • Description: Here we present a dataset from 84 DGC patients with paired tumor and nearby tissue. Tumors and their nearby tissues were evaluated by pathologists. Nearby tissues were designated as non-cancerous and were greater than 5 cm away from the surgery margin. Hematoxylin and eosin (H&E) stained sections were examined by two expert gastrointestinal pathologists (Z.L. and Yumei Lai) independently to confirm: (1) diffuse type (Lauren type); (2) >50% tumor cell nuclei; (3) <20% necrosis in tumor tissue; (4) no tumor cells in nearby tissue.
  • SpeciesList: scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
  • ModificationList: No PTMs are included in the dataset
  • Instrument: Q Exactive; LTQ Orbitrap

Dataset History

VersionDatetimeStatusChangeLog Entry
02018-02-02 00:37:19ID requested
12018-02-09 11:46:47announced
22018-02-14 02:01:35announcedUpdated project metadata.
32018-08-29 04:05:15announcedUpdated project metadata.
42018-08-29 04:06:09announcedUpdated project metadata.

Publication List

  1. Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, Hu Y, Li Y, Li Y, Gao J, Chen L, Xu J, Zhang C, Jung SY, Choi JM, Jain A, Liu M, Song L, Liu W, Guo G, Gong T, Huang Y, Qiu Y, Huang W, Shi T, Zhu W, Wang Y, He F, Shen L, Qin J, A proteomic landscape of diffuse-type gastric cancer. Nat Commun, 9(1):1012(2018) [pubmed]
  2. Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, Hu Y, Li Y, Li Y, Gao J, Chen L, Xu J, Zhang C, Jung SY, Choi JM, Jain A, Liu M, Song L, Liu W, Guo G, Gong T, Huang Y, Qiu Y, Huang W, Shi T, Zhu W, Wang Y, He F, Shen L, Qin J, Author Correction: A proteomic landscape of diffuse-type gastric cancer. Nat Commun, 9(1):1850(2018) [pubmed]

Keyword List

  1. curator keyword: Biomedical
  2. submitter keyword: Proteome, gastric cancer

Contact List

    Jun Qin
    • contact affiliation: National Center for Protein Sciences (The PHOENIX center, Beijing)
    • contact email: jqin@bcm.edu
    • lab head:
    Xia Xia
    • contact affiliation: National Center for Protein Sciences
    • contact email: xiax03@126.com
    • dataset submitter:

Full Dataset Link List

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  2. PRIDE project URI
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