PXD008840

PXD008840 is an original dataset announced via ProteomeXchange.

Title	A proteomic landscape of diffuse-type gastric cancer
Description	Here we present a dataset from 84 DGC patients with paired tumor and nearby tissue. Tumors and their nearby tissues were evaluated by pathologists. Nearby tissues were designated as non-cancerous and were greater than 5 cm away from the surgery margin. Hematoxylin and eosin (H&E) stained sections were examined by two expert gastrointestinal pathologists (Z.L. and Yumei Lai) independently to confirm: (1) diffuse type (Lauren type); (2) >50% tumor cell nuclei; (3) <20% necrosis in tumor tissue; (4) no tumor cells in nearby tissue.
HostingRepository	PRIDE
AnnounceDate	2018-02-14
AnnouncementXML	Submission_2018-08-29_04:06:07.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Xia Xia
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive; LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2018-02-02 00:37:19	ID requested
1	2018-02-09 11:46:47	announced
2	2018-02-14 02:01:35	announced	Updated project metadata.
3	2018-08-29 04:05:15	announced	Updated project metadata.
⏵ 4	2018-08-29 04:06:09	announced	Updated project metadata.

Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, Hu Y, Li Y, Li Y, Gao J, Chen L, Xu J, Zhang C, Jung SY, Choi JM, Jain A, Liu M, Song L, Liu W, Guo G, Gong T, Huang Y, Qiu Y, Huang W, Shi T, Zhu W, Wang Y, He F, Shen L, Qin J, A proteomic landscape of diffuse-type gastric cancer. Nat Commun, 9(1):1012(2018) [pubmed]

Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, Hu Y, Li Y, Li Y, Gao J, Chen L, Xu J, Zhang C, Jung SY, Choi JM, Jain A, Liu M, Song L, Liu W, Guo G, Gong T, Huang Y, Qiu Y, Huang W, Shi T, Zhu W, Wang Y, He F, Shen L, Qin J, Author Correction: A proteomic landscape of diffuse-type gastric cancer. Nat Commun, 9(1):1850(2018) [pubmed]

curator keyword: Biomedical

submitter keyword: Proteome, gastric cancer

Jun Qin
contact affiliation	National Center for Protein Sciences (The PHOENIX center, Beijing)
contact email	jqin@bcm.edu
lab head
Xia Xia
contact affiliation	National Center for Protein Sciences
contact email	xiax03@126.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/02/PXD008840

PRIDE project URI

• PRIDE
  1. PXD008840
     1. Label: PRIDE project
     2. Name: A proteomic landscape of diffuse-type gastric cancer