PXD008771
PXD008771 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | A proteomics landscape of circadian clock in mouse liver |
Description | As a circadian organ, liver executes diverse functions in different phase of the circadian clock. This process is believed to be driven by a transcription program. Here, we present a TF DNA-binding activity centered multi-dimensional proteomics landscape, including DNA-binding activity of TFs, the phosphorylation pattern, ubiquitylation pattern, the nuclear sub-proteome, the whole proteome as well as the transcriptome, to portrait the hierarchical circadian clock network of mouse liver. The TF DNA-binding activity indicates diurnal oscillation in four major pathways, immune response, glucose metabolism, fatty acid metabolism, and the cell cycle. We also isolated the mouse liver Kupffer cells and measured their proteomes in the circadian clock to reveal cell type resolved circadian clock. These are the most comprehensive datasets for circadian clock in the mouse liver and provided the richest data resource for the understanding of mouse liver physiology around the circadian clock. |
HostingRepository | iProX |
AnnounceDate | 2018-06-25 |
AnnouncementXML | Submission_2018-09-16_01:41:18.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Lei Song |
SpeciesList | scientific name: Mus musculus; NCBI TaxID: 10090; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion; Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2018-01-27 06:09:17 | ID requested | |
1 | 2018-01-27 06:09:42 | announced | |
2 | 2018-09-16 01:13:07 | announced | Update publication information |
⏵ 3 | 2018-09-16 01:41:19 | announced | Update publication information |
Publication List
Wang Y, Song L, Liu M, Ge R, Zhou Q, Liu W, Li R, Qie J, Zhen B, Wang Y, He F, Qin J, Ding C, A proteomics landscape of circadian clock in mouse liver. Nat Commun, 9(1):1553(2018) [pubmed] |
Keyword List
submitter keyword: proteomics , circadian clock, mouse liver |
Contact List
Jun Qin | |
---|---|
contact affiliation | State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences, Beijing 102206, China; |
contact email | jqin@bcm.edu |
lab head | |
Lei Song | |
contact affiliation | Beijing Proteome Research Center, National Center for Protein Sciences, Beijing |
contact email | duohu@163.com |
dataset submitter |
Full Dataset Link List
iProX dataset URI |