PXD008089 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Metaproteomics and direct Protein-SIF of the deep-sea mussel Bathymodiolus childressi and its bacterial symbionts |
Description | Bathymodiolus childressi is a species of deep-sea mussels found predominantly in the Gulf of Mexico. It colonizes cold seeps such as brine pool and oil seeps. The success of these animals in such environment is thought to be due to the symbiotic association of the mussel host with several species of bacteria. The aim of this study is to understand the role of the different partners involved in the symbiotic system using various “-omics” approaches. In addition to protein identification we used the mass spectrometry data generated and submitted with this project to derive the stable carbon isotope ratios for the different members of the symbiosis using the direct Protein-SIF method. The respective isotope pattern file and SIF computation files are included with this submission. |
HostingRepository | PRIDE |
AnnounceDate | 2019-09-25 |
AnnouncementXML | Submission_2020-02-21_02:37:06.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Tjorven Hinzke |
SpeciesList | scientific name: Archaea; NCBI TaxID: 2157; scientific name: Viruses; NCBI TaxID: 10239; scientific name: Bathymodiolus childressi; NCBI TaxID: 114452; scientific name: Bacteria; NCBI TaxID: 2; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-10-31 07:04:14 | ID requested | |
1 | 2019-09-25 07:36:53 | announced | |
2 | 2020-01-27 00:33:00 | announced | 2020-01-27: Updated publication reference for PubMed record(s): 31562384. |
⏵ 3 | 2020-02-21 02:37:08 | announced | 2020-01-27: Updated publication reference for PubMed record(s): 31562384.
2020-02-21: Updated publication reference for PubMed record(s): 31562384. |
Publication List
Assi, é A, Leisch N, Meier DV, Gruber-Vodicka H, Tegetmeyer HE, Meyerdierks A, Kleiner M, Hinzke T, Joye S, Saxton M, Dubilier N, Petersen JM, Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria). ISME J, 14(1):104-122(2020) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Chemosynthetic symbiosis, bacteria-animal symbiosis, cold seeps, epsilonproteobacteria, stable isotope fingerprinting, Calvin cycle, stable carbon isotopes, methanotrophic symbionts, 2D-LC-MS/MS, 1D-LC-MS/MS, Q Exactive Plus |
Contact List
Manuel Kleiner |
contact affiliation | Department of Geoscience, University of Calgary, Calgary, AB, Canada; Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA |
contact email | manuel_kleiner@ncsu.edu |
lab head | |
Tjorven Hinzke |
contact affiliation | University of Greifswald, Greifswald Intitute of Marine Biotechnology |
contact email | tjorven.hinzke@stud.uni-greifswald.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD008089
- Label: PRIDE project
- Name: Metaproteomics and direct Protein-SIF of the deep-sea mussel Bathymodiolus childressi and its bacterial symbionts