PXD007987-1
PXD007987 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Scallop byssal protein identification, part 2 |
Description | To explore the protein components for scallop byssus, the soluble fractions of scallop byssus was extract. For mass spectrometric analysis, proteins were extracted from byssal adhesive plaques, and the whole protein smple was treated with trypsin and analyzed using Thermo Fisher Q Exactive Mass Spectrometer (Thermo Fisher Scientific, USA). The mass spectrometry raw data were searched against the full set of predicted proteins from the C. farreri genome and Transcriptome using Mascot v2.3.0 (Matrix Science, London, UK). |
HostingRepository | PRIDE |
AnnounceDate | 2018-10-23 |
AnnouncementXML | Submission_2018-10-23_14:26:04.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Xiaokang Zhang |
SpeciesList | scientific name: Azumapecten farreri; NCBI TaxID: 106299; |
ModificationList | monohydroxylated residue; iodoacetic acid derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2017-10-18 01:42:32 | ID requested | |
⏵ 1 | 2018-10-23 14:26:06 | announced |
Publication List
Li Y, Sun X, Hu X, Xun X, Zhang J, Guo X, Jiao W, Zhang L, Liu W, Wang J, Li J, Sun Y, Miao Y, Zhang X, Cheng T, Xu G, Fu X, Wang Y, Yu X, Huang X, Lu W, Lv J, Mu C, Wang D, Li X, Xia Y, Li Y, Yang Z, Wang F, Zhang L, Xing Q, Dou H, Ning X, Dou J, Li Y, Kong D, Liu Y, Jiang Z, Li R, Wang S, Bao Z, Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins. Nat Commun, 8(1):1721(2017) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Scallop byssus, protein identification, adhesion, LC-MSMS |
Contact List
Weizhi liu | |
---|---|
contact affiliation | College of Marine Life Sciences, Ocean University of China, Qingdao, China |
contact email | liuweizhi@ouc.edu.cn |
lab head | |
Xiaokang Zhang | |
contact affiliation | Ocean University of China |
contact email | xiaokangzhang@126.com |
dataset submitter |
Full Dataset Link List
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD007987 |
PRIDE project URI |
Repository Record List
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