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PXD007922-2

PXD007922 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleMoss endogenous peptides, LC-MS/MS
DescriptionShort (<100 codons) open reading frames (sORFs) are common features of all genomes. Proof of translation of sORFs is an important step towards finding of functional sORF-encoded peptides (SEPs). We verified translation of our predicted sORFs using mass-spectrometry (MS) analysis which is often considered as the gold standard in detection of proteins or peptides in cell. Taking into account the shortage of proteomic methods in identifying small proteins or peptides, in our study we used “peptidomic” dataset - endogenous peptides, extracted from three types of moss cells – gametophores, protonemata and protoplasts
HostingRepositoryPRIDE
AnnounceDate2023-11-14
AnnouncementXMLSubmission_2023-11-14_08:49:22.688.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterIgor Fesenko
SpeciesList scientific name: Physcomitrella patens subsp. patens (Moss); NCBI TaxID: 3218;
ModificationListNo PTMs are included in the dataset
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-10-09 02:47:12ID requested
12019-08-08 03:13:33announced
22023-11-14 08:49:23announced2023-11-14: Updated project metadata.
Publication List
Dataset with its publication pending
Keyword List
curator keyword: Biological
submitter keyword: moss Physcomitrella patens tissues
Contact List
Vadim M Govorun
contact affiliationIBCH RAS
contact emailfesigor@gmail.com
lab head
Igor Fesenko
contact affiliationIBCH RAS
contact emailfesigor@gmail.com
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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