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PXD007819-1

PXD007819 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitlePediatric IBD MLI metaproteomics
DescriptionMucosal-luminal interface (MLI) samples were collected from a cohort of children with new-onset IBD and microbial cells were harvested and processed for metaproteomic analysis. Deep metaproteomics data analysis was then performed for better understanding the MLI microbiota functions in the development of pediatric IBD.
HostingRepositoryPRIDE
AnnounceDate2018-08-03
AnnouncementXMLSubmission_2018-08-03_10:21:20.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterXu Zhang
SpeciesList scientific name: human gut metagenome; NCBI TaxID: 408170;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-09-22 06:23:18ID requested
12018-08-03 10:21:22announced
Publication List
Zhang X, Deeke SA, Ning Z, Starr AE, Butcher J, Li J, Mayne J, Cheng K, Liao B, Li L, Singleton R, Mack D, Stintzi A, Figeys D, Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease. Nat Commun, 9(1):2873(2018) [pubmed]
Keyword List
curator keyword: Metaproteomics
submitter keyword: Children, LC-MSMS, intestine, microbiome, IBD
Contact List
Daniel Figeys
contact affiliationBMI, Faculty of Medicine, University of Ottawa, Canada
contact emaildfigeys@uottawa.ca
lab head
Xu Zhang
contact affiliationUniversity of Ottawa
contact emailcheuzhang@gmail.com
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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