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PXD007670-2

PXD007670 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleVitis vinifera rhizosphere characterization: a metaproteome approach
DescriptionRhizosphere is a complex system of interactions between plant roots, bacteria, fungi and animals, where the release of plant root exudates stimulates bacterial density and diversity. However, the majority of the bacteria in soil results to be unculturable but active. The aim of the present work was to characterize the microbial community associated to the root of V. vinifera cv. Pinot Noir not only under a taxonomic perspective, but also under a functional point of view, using a metaproteome approach. Our results underlined the difference between the metagenomic and metaproteomic approach and the large potentiality of proteomics in describing the environmental bacterial community and its activity. In fact, by this approach, that allows to investigate the mechanisms occurring in the rhizosphere, we showed that bacteria belonging to Streptomyces, Bacillus and Pseudomonas genera are the most active in protein expression. In the rhizosphere, the identified genera were involved mainly in phosphorus and nitrogen soil metabolism.
HostingRepositoryPRIDE
AnnounceDate2023-11-14
AnnouncementXMLSubmission_2023-11-14_08:49:20.730.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterElisa Bona
SpeciesList scientific name: Bacteria; NCBI TaxID: 2;
ModificationListmonohydroxylated residue; deamidated residue
InstrumentTripleTOF 5600
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-09-06 03:49:03ID requested
12022-02-28 02:42:28announced
22023-11-14 08:49:21announced2023-11-14: Updated project metadata.
Publication List
Dataset with its publication pending
Keyword List
curator keyword: Metaproteomics, Biological
submitter keyword: Vineyard, Rhizosphere metaproteome
Contact List
Elisa Bona
contact affiliationUniversità del Piemonte Orientale, Dipartimento di Scienze e Innovazione Tecnologica, Piazza San Eusebio 5, 13100 Vercelli, Italy
contact emailelisa.bona@uniupo.it
lab head
Elisa Bona
contact affiliationuniversità del Piemonte orientale
contact emailelisa.bona@uniupo.it
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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