PXD007670

PXD007670 is an original dataset announced via ProteomeXchange.

Title	Vitis vinifera rhizosphere characterization: a metaproteome approach
Description	Rhizosphere is a complex system of interactions between plant roots, bacteria, fungi and animals, where the release of plant root exudates stimulates bacterial density and diversity. However, the majority of the bacteria in soil results to be unculturable but active. The aim of the present work was to characterize the microbial community associated to the root of V. vinifera cv. Pinot Noir not only under a taxonomic perspective, but also under a functional point of view, using a metaproteome approach. Our results underlined the difference between the metagenomic and metaproteomic approach and the large potentiality of proteomics in describing the environmental bacterial community and its activity. In fact, by this approach, that allows to investigate the mechanisms occurring in the rhizosphere, we showed that bacteria belonging to Streptomyces, Bacillus and Pseudomonas genera are the most active in protein expression. In the rhizosphere, the identified genera were involved mainly in phosphorus and nitrogen soil metabolism.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:49:20.730.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Elisa Bona
SpeciesList	scientific name: Bacteria; NCBI TaxID: 2;
ModificationList	monohydroxylated residue; deamidated residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2017-09-06 03:49:03	ID requested
1	2022-02-28 02:42:28	announced
⏵ 2	2023-11-14 08:49:21	announced	2023-11-14: Updated project metadata.

Dataset with its publication pending

curator keyword: Metaproteomics, Biological

submitter keyword: Vineyard, Rhizosphere metaproteome

Elisa Bona
contact affiliation	Università del Piemonte Orientale, Dipartimento di Scienze e Innovazione Tecnologica, Piazza San Eusebio 5, 13100 Vercelli, Italy
contact email	elisa.bona@uniupo.it
lab head
Elisa Bona
contact affiliation	università del Piemonte orientale
contact email	elisa.bona@uniupo.it
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD007670

PRIDE project URI

• PRIDE
  1. PXD007670
     1. Label: PRIDE project
     2. Name: Vitis vinifera rhizosphere characterization: a metaproteome approach