PXD005810 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Dynamics of Proteo-Transcriptomic Response to HIV-1 Infection |
Description | We have investigated the dynamic host response to HIV-1 infection by systematically measuring transcriptome, proteome and phosphoproteome expression changes in infected and uninfected SupT1 CD4+ T cells at 5 time-points throughout the HIV-1 replication cycle (from 2h to 24h). |
HostingRepository | PRIDE |
AnnounceDate | 2019-01-23 |
AnnouncementXML | Submission_2019-01-23_00:30:15.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Manfredo Quadroni |
SpeciesList | scientific name: Human immunodeficiency virus type 1 3916-CRO; NCBI TaxID: 657192; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | phosphorylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-01-30 07:47:31 | ID requested | |
1 | 2019-01-22 07:07:32 | announced | |
⏵ 2 | 2019-01-23 00:30:17 | announced | Updated project metadata. |
Publication List
Golumbeanu M, Desfarges S, Hernandez C, Quadroni M, Rato S, Mohammadi P, Telenti A, Beerenwinkel N, Ciuffi A, Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection. Sci Rep, 9(1):213(2019) [pubmed] |
Keyword List
curator keyword: Biomedical |
submitter keyword: Human, HIV, T-cells, infection, viral replication, proteomics, transcriptomics, phosphoprotein |
Contact List
Manfredo Quadroni |
contact affiliation | Center for Integrative Genomics, University of Lausanne, Switzerland |
contact email | manfredo.quadroni@unil.ch |
lab head | |
Manfredo Quadroni |
contact affiliation | University of Lausanne |
contact email | manfredo.quadroni@unil.ch |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD005810 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD005810
- Label: PRIDE project
- Name: Dynamics of Proteo-Transcriptomic Response to HIV-1 Infection