<<< Full experiment listing

PXD005214

PXD005214 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitlePhosphoproteins in extracellular vehicles as candidate markers for breast cancer
DescriptionThe state of protein phosphorylation can be a key determinant of cellular physiology such as early stage cancer, but the development of phosphoproteins from biofluids for disease diagnosis remains elusive. Here we demonstrate, for the first time, a strategy to isolate and identify phosphoproteins in extracellular vehicles from human plasma as potential markers to differentiate disease from healthy states. We identified close to 10,000 unique phosphopeptides, representing 2108 phosphoproteins, in EVs isolated from small volume of plasma samples. Using label-free quantitative proteomics, we quantified 144 phosphoproteins in plasma EVs that are significantly higher in patients diagnosed with breast cancer than in healthy controls. Multiple novel biomarkers were validated in 13 patients using Paralleled Reaction Monitoring and antibody- and non-antibody based assays. The study demonstrated that the development of phosphoproteins in plasma EV as disease biomarkers is highly feasible and may transform cancer screening and monitoring.
HostingRepositoryPRIDE
AnnounceDate2017-03-23
AnnouncementXMLSubmission_2017-03-23_10:15:05.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterI-Hsuan Chen
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListphosphorylated residue
InstrumentLTQ Orbitrap Velos; Q Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02016-10-24 03:43:35ID requested
12017-03-23 10:15:06announced
Publication List
Chen IH, Xue L, Hsu CC, Paez JS, Pan L, Andaluz H, Wendt MK, Iliuk AB, Zhu JK, Tao WA, Phosphoproteins in extracellular vesicles as candidate markers for breast cancer. Proc Natl Acad Sci U S A, 114(12):3175-3180(2017) [pubmed]
Keyword List
curator keyword: Biomedical
submitter keyword: Extracellular vesicles, phosphoproteomics, plasma, biomarker
Contact List
Weiguo Andy Tao
contact affiliationDepartment of Biochemistry, Purdue University, West Lafayette, IN USA
contact emailtaow@purdue.edu
lab head
I-Hsuan Chen
contact affiliationPurdue University
contact emailchen1329@purdue.edu
dataset submitter
Full Dataset Link List
Dataset FTP location
PRIDE project URI
Repository Record List
[ + ]