PXD005176-2
PXD005176 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Phosphoproteomics comparison between SW480 and SW620 cells |
Description | Quantitative phosphoproteome analyses of colorectal cancer cell lines (metastatis: SW620, non-metastatis: SW480) were carried out using IMAC-based posphopeptide enrichment followed by SCX-RP-MS/MS with SILAC labeling (SW480: light-label, SW620: heavy-label). The obtained results were searched against UniProt DB by Mascot, and the identified peptides were filtered at 1% FDR thresholds by searching against the randomized decoy DB at peptide level. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project. |
HostingRepository | jPOST |
AnnounceDate | 2016-10-18 |
AnnouncementXML | Submission_2016-11-17_18:14:33.xml |
DigitalObjectIdentifier | |
ReviewLevel | Non peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Mariko Ito |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | iodoacetamide derivatized residue; L-aspartic 4-phosphoric anhydride; 6x(13)C labeled residue; 6x(13)C,4x(15)N labeled L-arginine |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2016-10-17 10:36:10 | ID requested | |
1 | 2016-10-17 21:29:09 | announced | |
⏵ 2 | 2016-11-17 18:14:34 | announced | Updated keyword list. |
3 | 2017-03-30 23:38:19 | announced | Updated Repository support. |
4 | 2017-03-31 00:18:32 | announced | Updated DigitalObjectIdentifier. |
5 | 2018-09-18 23:46:13 | announced | Updated CV, FTP location and Modification list. |
6 | 2021-02-04 17:15:06 | announced | 2021-02-04: Updated FTP location. |
7 | 2022-09-18 03:04:04 | announced | 2022-09-18: Updated FTP location. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: colorectal cancer |
FASP |
IMAC |
missing protein |
phosphopeptide |
PhosphoSitePlus |
Contact List
Takeshi Tomonaga | |
---|---|
lab head | |
Mariko Ito | |
contact affiliation | Kyoto Univ. |
dataset submitter |
Full Dataset Link List
jPOST dataset URI |