PXD005173-1
PXD005173 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Phosphoproteomic data of colon tissue (tumor or non-tumor) |
Description | Phosphoproteome analyses of colorectal cancer tissues from 20 patients (20 tumors and 20 tumor-adjacent normal tissues) were carried out using IMAC-based posphopeptide enrichment followed by SCX-RP-MS/MS. The obtained results were searched against UniProt DB by Mascot, and the identified peptides were filtered at 1% FDR thresholds by searching against the randomized decoy DB at peptide level. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project. |
HostingRepository | jPOST |
AnnounceDate | 2016-10-18 |
AnnouncementXML | Submission_2016-10-17_21:30:19.xml |
DigitalObjectIdentifier | |
ReviewLevel | Non peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Mariko Ito |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | iodoacetamide derivatized residue; (2S,3R)-3-hydroxyaspartic acid; L-aspartic 4-phosphoric anhydride |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2016-10-17 07:23:18 | ID requested | |
⏵ 1 | 2016-10-17 21:30:19 | announced | |
2 | 2016-11-17 18:17:01 | announced | Updated keyword list. |
3 | 2017-03-30 23:39:56 | announced | Updated Repository support. |
4 | 2017-03-31 00:20:20 | announced | Updated DigitalObjectIdentifier. |
5 | 2018-09-18 23:47:55 | announced | Updated CV, FTP location and Modification list. |
6 | 2021-02-04 17:12:16 | announced | 2021-02-04: Updated FTP location. |
7 | 2022-09-18 02:43:55 | announced | 2022-09-18: Updated FTP location. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Chromosome-Centric Human Proteome Project |
colorectal cancer |
FASP |
missing protein |
neXtProt |
Contact List
Takeshi Tomonaga | |
---|---|
lab head | |
Mariko Ito | |
contact affiliation | Kyoto Univ. |
dataset submitter |
Full Dataset Link List
jPOST dataset URI |