PXD005172-6
PXD005172 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomics comparison between SW480 and SW620 cells |
Description | Quantitative proteome analyses of colorectal cancer cell lines (metastatis: SW620, non-metastatis: SW480) were carried out using SCX-RP-MS/MS with SILAC labeling(SW480: light-label, SW620: heavy-label). The obtained results were searched against UniProt DB by Mascot, and the identified peptides and proteins were filtered at 1% FDR thresholds by searching against the randomized decoy DB both at peptide and protein levels. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project. |
HostingRepository | jPOST |
AnnounceDate | 2016-10-18 |
AnnouncementXML | Submission_2021-02-04_17:10:31.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD005172 |
ReviewLevel | Non peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Mariko Ito |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide; alpha-amino acetylated residue; 6x(13)C labeled L-lysine; Label:13C(6)15N(4) |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2016-10-17 07:02:57 | ID requested | |
1 | 2016-10-17 21:29:39 | announced | |
2 | 2016-11-17 18:15:17 | announced | Updated keyword list. |
3 | 2017-03-30 23:39:03 | announced | Updated Repository support. |
4 | 2017-03-31 00:19:22 | announced | Updated DigitalObjectIdentifier. |
5 | 2018-09-18 23:47:05 | announced | Updated CV, FTP location and Modification list. |
⏵ 6 | 2021-02-04 17:10:31 | announced | 2021-02-04: Updated FTP location. |
7 | 2022-09-18 03:49:50 | announced | 2022-09-18: Updated FTP location. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: colorectal cancer |
FASP |
missing protein; |
Contact List
Takeshi Tomonaga | |
---|---|
lab head | |
Mariko Ito | |
contact affiliation | Kyoto Univ. |
dataset submitter |
Full Dataset Link List
jPOST dataset URI |
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.biosciencedbc.jp/archive/jpostrepos/JPST000208 |