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PXD005171-1

PXD005171 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleQuantitative phosphoproteomics of colorectal cancer tissues
DescriptionQuantitative phosphoproteome analyses of colorectal cancer tissues from 24 patients (12 with or without metastasis) were carried out using IMAC-based posphopeptide enrichment followed by SCX-RP-MS/MS with iTRAQ labeling(metastasis:iTRAQ115 or 117, no metastasis: iTRAQ114 or 116). The obtained results were searched against UniProt DB by Mascot, and the identified peptides were filtered at 1% FDR thresholds by searching against the randomized decoy DB at peptide level. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project.
HostingRepositoryjPOST
AnnounceDate2016-10-18
AnnouncementXMLSubmission_2016-10-17_21:27:00.xml
DigitalObjectIdentifier
ReviewLevelNon peer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMariko Ito
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListiodoacetamide derivatized residue; (2S,3R)-3-hydroxyaspartic acid; Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry; iTRAQ4plex; L-aspartic 4-phosphoric anhydride
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02016-10-17 06:57:35ID requested
12016-10-17 21:27:01announced
22017-03-30 23:36:19announcedUpdated Repository support.
32017-03-31 00:14:08announcedUpdated DigitalObjectIdentifier.
42018-09-18 23:42:57announcedUpdated CV, FTP location and Modification list.
52021-02-04 17:07:25announced2021-02-04: Updated FTP location.
62022-09-18 02:55:13announced2022-09-18: Updated FTP location.
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Chromosome-Centric Human Proteome Project
colorectal cancer
FASP
IMAC
missing protein
neXtProt
phosphopeptide
PhosphoSitePlus
Contact List
Takeshi Tomonaga
lab head
Mariko Ito
contact affiliationKyoto Univ.
dataset submitter
Full Dataset Link List
jPOST dataset URI