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PXD004921-2

PXD004921 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleGeoduck (Panopea generosa) gonad LC-MS/MS DIA
DescriptionGeoduck clams (Panopea generosa) were collected from Puget Sound, WA in November, 2014. Male and female geoduck gonads were sampled at three reproductive stages over the course of three months: early, middle, and late. Early stage indicates that the gonad cells are just beginning to differentiate and late stage indicates that the geoduck are ready to spawn. The goal of this study was to identify biomarkers of the geoduck reproductive cycle. Due to the restriction of our current data model we can not add multiple names as Lab Head. However, this Project has been equally led by Steven B. Roberts and Brook L. Nunn.
HostingRepositoryPRIDE
AnnounceDate2018-12-04
AnnouncementXMLSubmission_2018-12-04_01:40:41.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterEmma Timmins-Schiffman
SpeciesList scientific name: Panopea generosa; NCBI TaxID: 1049056;
ModificationListNo PTMs are included in the dataset
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02016-09-12 01:51:52ID requested
12017-01-02 12:47:20announced
22018-12-04 01:40:43announcedUpdated project metadata.
Publication List
Timmins-Schiffman EB, Crandall GA, Vadopalas B, Riffle ME, Nunn BL, Roberts SB, Integrating Discovery-driven Proteomics and Selected Reaction Monitoring To Develop a Noninvasive Assay for Geoduck Reproductive Maturation. J Proteome Res, 16(9):3298-3309(2017) [pubmed]
Keyword List
curator keyword: Biological
submitter keyword: geoduck, panopea, gonad, reproduction, DIA
Contact List
Steven B. Roberts
contact affiliationSchool of Aquatic and Fishery Sciences, University of Washington
contact emailsr320@uw.edu
lab head
Emma Timmins-Schiffman
contact affiliationUniversity of Washington
contact emailemsie25@gmail.com
dataset submitter
Full Dataset Link List
Dataset FTP location
PRIDE project URI
Repository Record List
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