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DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2018-12-04
  • AnnouncementXML: Submission_2018-12-04_01:40:41.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Unsupported dataset by repository
  • PrimarySubmitter: Emma Timmins-Schiffman
  • Title: Geoduck (Panopea generosa) gonad LC-MS/MS DIA
  • Description: Geoduck clams (Panopea generosa) were collected from Puget Sound, WA in November, 2014. Male and female geoduck gonads were sampled at three reproductive stages over the course of three months: early, middle, and late. Early stage indicates that the gonad cells are just beginning to differentiate and late stage indicates that the geoduck are ready to spawn. The goal of this study was to identify biomarkers of the geoduck reproductive cycle. Due to the restriction of our current data model we can not add multiple names as Lab Head. However, this Project has been equally led by Steven B. Roberts and Brook L. Nunn.
  • SpeciesList: scientific name: Panopea generosa; NCBI TaxID: 1049056;
  • ModificationList: No PTMs are included in the dataset
  • Instrument: Q Exactive

Dataset History

VersionDatetimeStatusChangeLog Entry
02016-09-12 01:51:52ID requested
12017-01-02 12:47:20announced
22018-12-04 01:40:43announcedUpdated project metadata.

Publication List

  1. Timmins-Schiffman EB, Crandall GA, Vadopalas B, Riffle ME, Nunn BL, Roberts SB, Integrating Discovery-driven Proteomics and Selected Reaction Monitoring To Develop a Noninvasive Assay for Geoduck Reproductive Maturation. J Proteome Res, 16(9):3298-3309(2017) [pubmed]

Keyword List

  1. curator keyword: Biological
  2. submitter keyword: geoduck, panopea, gonad, reproduction, DIA

Contact List

    Steven B. Roberts
    • contact affiliation: School of Aquatic and Fishery Sciences, University of Washington
    • contact email: sr320@uw.edu
    • lab head:
    Emma Timmins-Schiffman
    • contact affiliation: University of Washington
    • contact email: emsie25@gmail.com
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List

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