PXD003177-2

PXD003177 is an original dataset announced via ProteomeXchange.

Title	Germ-free mouse ileum iTRAQ shotgun LC-MSMS
Description	Shotgun proteomics of normal versus germ-free mouse terminal ileum. 39 mice. Male and female. BALBc and C57BL10. The samples were labeled using iTRAQ 8plex and analyzed using a nano-LC-LTQ-Orbitrap-Velos-MSMS. This is the proteomics data from an n-omics project.
HostingRepository	PRIDE
AnnounceDate	2017-10-04
AnnouncementXML	Submission_2017-11-01_05:04:49.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Aleksandra Nita-Lazar
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	amidated residue; L-methionine removal; iTRAQ8plex-116 reporter+balance reagent acylated residue; monohydroxylated residue; acetylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2015-11-11 06:13:35	ID requested
1	2017-10-04 02:06:33	announced
⏵ 2	2017-11-01 05:04:50	announced	Updated publication reference for PubMed record(s): 29085914.

Manes NP, Shulzhenko N, Nuccio AG, Azeem S, Morgun A, Nita-Lazar A, Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota. mSystems, 2(5):(2017) [pubmed]

curator keyword: Biological

submitter keyword: Germ-free, mouse, ileum, iTRAQ, LC-MSMS, Orbitrap

Aleksandra Nita-Lazar
contact affiliation	Cellular Networks Proteomics Unit, Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, HHS, USA
contact email	nitalazarau@niaid.nih.gov
lab head
Aleksandra Nita-Lazar
contact affiliation	NIAID
contact email	nitalazarau@niaid.nih.gov
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/10/PXD003177

PRIDE project URI

• PRIDE
  1. PXD003177
     1. Label: PRIDE project
     2. Name: Germ-free mouse ileum iTRAQ shotgun LC-MSMS