PXD003177 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Germ-free mouse ileum iTRAQ shotgun LC-MSMS |
Description | Shotgun proteomics of normal versus germ-free mouse terminal ileum. 39 mice. Male and female. BALBc and C57BL10. The samples were labeled using iTRAQ 8plex and analyzed using a nano-LC-LTQ-Orbitrap-Velos-MSMS. This is the proteomics data from an n-omics project. |
HostingRepository | PRIDE |
AnnounceDate | 2017-10-04 |
AnnouncementXML | Submission_2017-11-01_05:04:49.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Aleksandra Nita-Lazar |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; |
ModificationList | amidated residue; L-methionine removal; iTRAQ8plex-116 reporter+balance reagent acylated residue; monohydroxylated residue; acetylated residue; deamidated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-11-11 06:13:35 | ID requested | |
1 | 2017-10-04 02:06:33 | announced | |
⏵ 2 | 2017-11-01 05:04:50 | announced | Updated publication reference for PubMed record(s): 29085914. |
Publication List
Manes NP, Shulzhenko N, Nuccio AG, Azeem S, Morgun A, Nita-Lazar A, Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota. mSystems, 2(5):(2017) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Germ-free, mouse, ileum, iTRAQ, LC-MSMS, Orbitrap |
Contact List
Aleksandra Nita-Lazar |
contact affiliation | Cellular Networks Proteomics Unit, Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, HHS, USA |
contact email | nitalazarau@niaid.nih.gov |
lab head | |
Aleksandra Nita-Lazar |
contact affiliation | NIAID |
contact email | nitalazarau@niaid.nih.gov |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/10/PXD003177 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD003177
- Label: PRIDE project
- Name: Germ-free mouse ileum iTRAQ shotgun LC-MSMS