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PXD003177 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleGerm-free mouse ileum iTRAQ shotgun LC-MSMS
DescriptionShotgun proteomics of normal versus germ-free mouse terminal ileum. 39 mice. Male and female. BALBc and C57BL10. The samples were labeled using iTRAQ 8plex and analyzed using a nano-LC-LTQ-Orbitrap-Velos-MSMS. This is the proteomics data from an n-omics project.
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterAleksandra Nita-Lazar
SpeciesList scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationListamidated residue; L-methionine removal; iTRAQ8plex-116 reporter+balance reagent acylated residue; monohydroxylated residue; acetylated residue; deamidated residue; iodoacetamide derivatized residue
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02015-11-11 06:13:35ID requested
12017-10-04 02:06:33announced
22017-11-01 05:04:50announcedUpdated publication reference for PubMed record(s): 29085914.
Publication List
Manes NP, Shulzhenko N, Nuccio AG, Azeem S, Morgun A, Nita-Lazar A, Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota. mSystems, 2(5):(2017) [pubmed]
Keyword List
curator keyword: Biological
submitter keyword: Germ-free, mouse, ileum, iTRAQ, LC-MSMS, Orbitrap
Contact List
Aleksandra Nita-Lazar
contact affiliationCellular Networks Proteomics Unit, Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, HHS, USA
contact emailnitalazarau@niaid.nih.gov
lab head
Aleksandra Nita-Lazar
contact affiliationNIAID
contact emailnitalazarau@niaid.nih.gov
dataset submitter
Full Dataset Link List
Dataset FTP location
PRIDE project URI
Repository Record List
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