PXD003101 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteome-wide identification of SAPs in an industrial yeast strain |
Description | Most proteogenomic approaches for mapping single amino acid polymorphisms (SAPs) require construction of a sample-specific database containing protein variants predicted from the next-generation sequencing (NGS) data. We present a new strategy for direct SAP detection without relying on NGS data. Among the 348 putative SAP peptides identified in an industrial yeast strain, 85.6% of SAP sites were validated by genomic sequencing. |
HostingRepository | PRIDE |
AnnounceDate | 2018-04-18 |
AnnouncementXML | Submission_2018-04-18_02:03:40.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Guo Yufeng |
SpeciesList | scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | TripleTOF 5600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-10-23 01:07:58 | ID requested | |
⏵ 1 | 2018-04-18 02:03:42 | announced | |
Publication List
Xiong Y, Guo Y, Xiao W, Cao Q, Li S, Qi X, Zhang Z, Wang Q, Shui W, An NGS-Independent Strategy for Proteome-Wide Identification of Single Amino Acid Polymorphisms by Mass Spectrometry. Anal Chem, 88(5):2784-91(2016) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: proteogenomics, SAP, industrial yeast strain |
Contact List
Wenqing Shui |
contact affiliation | Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences |
contact email | shui_wq@tib.cas.cn |
lab head | |
Guo Yufeng |
contact affiliation | Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences |
contact email | guo_yf@tib.cas.cn |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD003101
- Label: PRIDE project
- Name: Proteome-wide identification of SAPs in an industrial yeast strain