PXD003101

PXD003101 is an original dataset announced via ProteomeXchange.

Title	Proteome-wide identification of SAPs in an industrial yeast strain
Description	Most proteogenomic approaches for mapping single amino acid polymorphisms (SAPs) require construction of a sample-specific database containing protein variants predicted from the next-generation sequencing (NGS) data. We present a new strategy for direct SAP detection without relying on NGS data. Among the 348 putative SAP peptides identified in an industrial yeast strain, 85.6% of SAP sites were validated by genomic sequencing.
HostingRepository	PRIDE
AnnounceDate	2018-04-18
AnnouncementXML	Submission_2018-04-18_02:03:40.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Guo Yufeng
SpeciesList	scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2015-10-23 01:07:58	ID requested
⏵ 1	2018-04-18 02:03:42	announced

Xiong Y, Guo Y, Xiao W, Cao Q, Li S, Qi X, Zhang Z, Wang Q, Shui W, An NGS-Independent Strategy for Proteome-Wide Identification of Single Amino Acid Polymorphisms by Mass Spectrometry. Anal Chem, 88(5):2784-91(2016) [pubmed]

curator keyword: Biological

submitter keyword: proteogenomics, SAP, industrial yeast strain

Wenqing Shui
contact affiliation	Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences
contact email	shui_wq@tib.cas.cn
lab head
Guo Yufeng
contact affiliation	Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences
contact email	guo_yf@tib.cas.cn
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/04/PXD003101

PRIDE project URI

• PRIDE
  1. PXD003101
     1. Label: PRIDE project
     2. Name: Proteome-wide identification of SAPs in an industrial yeast strain