PXD002867 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Peptidomics of circular cysteine-rich plant peptides – Analysis of the diversity of cyclotides from Viola tricolor by transcriptome- and proteome-mining |
Description | circular peptides, cystine-knot, transcriptome, peptidomics, Violaceae, ribosomally synthesized and post-translationally modified peptides natural products, mass spectrometry, 1kp |
HostingRepository | PRIDE |
AnnounceDate | 2017-08-02 |
AnnouncementXML | Submission_2017-08-02_09:25:58.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD002867 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Roland Hellinger |
SpeciesList | scientific name: Viola tricolor; NCBI TaxID: 214053; scientific name: Viola tricolor subsp. tricolor; NCBI TaxID: 334249; |
ModificationList | Ethyl: 28.0313; deamidated residue: 0.984016; monomethylated residue: 14.01565; monohydroxylated residue: 15.994915; Trp->Kynurenin: 3.994915; Trp->Hydroxykynurenin: 19.989829; iodoacetamide derivatized residue: 57.021464 |
Instrument | Bruker Daltonics micrOTOF series |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-09-07 03:33:37 | ID requested | |
1 | 2015-10-02 05:09:49 | announced | |
⏵ 2 | 2017-08-02 09:26:00 | announced | Updated project metadata. |
Publication List
Hellinger R, Koehbach J, Soltis DE, Carpenter EJ, Wong GK, Gruber CW, Peptidomics of Circular Cysteine-Rich Plant Peptides: Analysis of the Diversity of Cyclotides from Viola tricolor by Transcriptome and Proteome Mining. J Proteome Res, 14(11):4851-62(2015) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: circular peptides, cystine-knot, transcriptome, peptidomics, Violaceae, ribosomally synthesized and post-translationally modified peptides natural products, mass spectrometry, 1kp |
Contact List
Christian W. Gruber |
contact affiliation | Medical University of Vienna Center for Physiology and Pharmacology Schwarzspanierstr. 17 A-1090 Vienna, Austria Phone: +43-1-40160-31390 Email: christian.w.gruber@meduniwien.ac.at www.meduniwien.ac.at/pharmakologie/ms |
contact email | roland.hellinger@meduniwien.ac.at |
lab head | |
Roland Hellinger |
contact affiliation | Medical University of Vienna, Center for Pharmacology and Physiology |
contact email | roland.hellinger@meduniwien.ac.at |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/10/PXD002867 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD002867
- Label: PRIDE project
- Name: Peptidomics of circular cysteine-rich plant peptides – Analysis of the diversity of cyclotides from Viola tricolor by transcriptome- and proteome-mining