PXD002867

PXD002867 is an original dataset announced via ProteomeXchange.

Title	Peptidomics of circular cysteine-rich plant peptides – Analysis of the diversity of cyclotides from Viola tricolor by transcriptome- and proteome-mining
Description	circular peptides, cystine-knot, transcriptome, peptidomics, Violaceae, ribosomally synthesized and post-translationally modified peptides natural products, mass spectrometry, 1kp
HostingRepository	PRIDE
AnnounceDate	2017-08-02
AnnouncementXML	Submission_2017-08-02_09:25:58.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD002867
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Roland Hellinger
SpeciesList	scientific name: Viola tricolor; NCBI TaxID: 214053; scientific name: Viola tricolor subsp. tricolor; NCBI TaxID: 334249;
ModificationList	Ethyl: 28.0313; deamidated residue: 0.984016; monomethylated residue: 14.01565; monohydroxylated residue: 15.994915; Trp->Kynurenin: 3.994915; Trp->Hydroxykynurenin: 19.989829; iodoacetamide derivatized residue: 57.021464
Instrument	Bruker Daltonics micrOTOF series

Revision	Datetime	Status	ChangeLog Entry
0	2015-09-07 03:33:37	ID requested
1	2015-10-02 05:09:49	announced
⏵ 2	2017-08-02 09:26:00	announced	Updated project metadata.

Hellinger R, Koehbach J, Soltis DE, Carpenter EJ, Wong GK, Gruber CW, Peptidomics of Circular Cysteine-Rich Plant Peptides: Analysis of the Diversity of Cyclotides from Viola tricolor by Transcriptome and Proteome Mining. J Proteome Res, 14(11):4851-62(2015) [pubmed]

curator keyword: Biological

submitter keyword: circular peptides, cystine-knot, transcriptome, peptidomics, Violaceae, ribosomally synthesized and post-translationally modified peptides natural products, mass spectrometry, 1kp

Christian W. Gruber
contact affiliation	Medical University of Vienna Center for Physiology and Pharmacology Schwarzspanierstr. 17 A-1090 Vienna, Austria Phone: +43-1-40160-31390 Email: christian.w.gruber@meduniwien.ac.at www.meduniwien.ac.at/pharmakologie/ms
contact email	roland.hellinger@meduniwien.ac.at
lab head
Roland Hellinger
contact affiliation	Medical University of Vienna, Center for Pharmacology and Physiology
contact email	roland.hellinger@meduniwien.ac.at
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/10/PXD002867

PRIDE project URI

• PRIDE
  1. PXD002867
     1. Label: PRIDE project
     2. Name: Peptidomics of circular cysteine-rich plant peptides – Analysis of the diversity of cyclotides from Viola tricolor by transcriptome- and proteome-mining