PXD002131-1

PXD002131 is an original dataset announced via ProteomeXchange.

Title	Franco-Swiss HPP project (Chromosomes 2 and 14)
Description	The dataset is a concatenation of nanoLC-MS/MS analyses performed on different sample types/sample preparations of human proteins on various instrumental platforms in the laboratory. A franco-swiss collaboration to identify missing human proteins on chromosomes 2 and 14 in the frame of the Human Proteome Project, set up a bioinformatic screen over all datasets accumulated in the laboratory in order to detect proteins classified as “missing” by NextProt.
HostingRepository	PRIDE
AnnounceDate	2015-07-17
AnnouncementXML	Submission_2015-07-17_07:00:22.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Emmanuelle Mouton Barbosa
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	S-carboxamidoethyl-L-cysteine; deamidated residue; iTRAQ8plex-116 reporter+balance reagent acylated residue; acetylated residue
Instrument	Q Exactive; LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2015-05-01 01:51:38	ID requested
⏵ 1	2015-07-17 07:00:24	announced

Carapito C, Lane L, Benama M, Opsomer A, Mouton-Barbosa E, Garrigues L, Gonzalez de Peredo A, Burel A, Bruley C, Gateau A, Bouyssi, é D, Jaquinod M, Cianferani S, Burlet-Schiltz O, Van Dorsselaer A, Garin J, Vandenbrouck Y, Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14. J Proteome Res, 14(9):3621-34(2015) [pubmed]

ProteomeXchange project tag: Chromosome-centric Human Proteome Project (C-HPP), Human Proteome Project

submitter keyword: Homo sapiens (Human)

Odile Bruley Schiltz
contact affiliation	CNRS UMR5089 Institut de Pharmacologie et de Biologie Structurale Université de Toulouse Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), IPHC, Université de Strasbourg CEA, DSV, iRTSV, Laboratoire de Biologie à Grande Echelle, INSERM U1038, Université de Grenoble
contact email	emmanuelle.mouton@ipbs.fr
lab head
Emmanuelle Mouton Barbosa
contact affiliation	IPBS CNRS
contact email	emmanuelle.mouton@ipbs.fr
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/07/PXD002131

PRIDE project URI

• PRIDE
  1. PXD002131
     1. Label: PRIDE project
     2. Name: Franco-Swiss HPP project (Chromosomes 2 and 14)