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PXD002131

DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2015-07-17
  • AnnouncementXML: Submission_2015-07-17_07:00:22.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Unsupported dataset by repository
  • PrimarySubmitter: Emmanuelle Mouton Barbosa
  • Title: Franco-Swiss HPP project (Chromosomes 2 and 14)
  • Description: The dataset is a concatenation of nanoLC-MS/MS analyses performed on different sample types/sample preparations of human proteins on various instrumental platforms in the laboratory. A franco-swiss collaboration to identify missing human proteins on chromosomes 2 and 14 in the frame of the Human Proteome Project, set up a bioinformatic screen over all datasets accumulated in the laboratory in order to detect proteins classified as “missing” by NextProt.
  • SpeciesList: scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
  • ModificationList: S-carboxamidoethyl-L-cysteine; deamidated residue; iTRAQ8plex-116 reporter+balance reagent acylated residue; acetylated residue
  • Instrument: Q Exactive; LTQ Orbitrap Velos

Dataset History

VersionDatetimeStatusChangeLog Entry
02015-05-01 01:51:38ID requested
12015-07-17 07:00:24announced

Publication List

  1. Carapito C, Lane L, Benama M, Opsomer A, Mouton-Barbosa E, Garrigues L, Gonzalez de Peredo A, Burel A, Bruley C, Gateau A, Bouyssié D, Jaquinod M, Cianferani S, Burlet-Schiltz O, Van Dorsselaer A, Garin J, Vandenbrouck Y, Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14. J Proteome Res, 14(9):3621-34(2015) [pubmed]

Keyword List

  1. ProteomeXchange project tag: Chromosome-centric Human Proteome Project (C-HPP), Human Proteome Project
  2. submitter keyword: Homo sapiens (Human)

Contact List

    Odile Bruley Schiltz
    • contact affiliation: CNRS UMR5089 Institut de Pharmacologie et de Biologie Structurale Université de Toulouse Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), IPHC, Université de Strasbourg CEA, DSV, iRTSV, Laboratoire de Biologie à Grande Echelle, INSERM U1038, Université de Grenoble
    • contact email: emmanuelle.mouton@ipbs.fr
    • lab head:
    Emmanuelle Mouton Barbosa
    • contact affiliation: IPBS CNRS
    • contact email: emmanuelle.mouton@ipbs.fr
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List
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