PXD001943 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Shotgun proteomic analysis of embryonic axis of soybean seeds during germination under salt stress |
Description | Salinity is one of the main environmental stresses worldwide limiting soybean growth and yield. Seed imbibition and radical emergence are generally less affected by salinity in soybean. Towards unraveling the mechanisms underlying salt tolerance in soybean at germination stage, a comprehensive quantitative proteomic analysis of proteins from soybean embryonic axis during germination sensu stricto (GSS) under saline conditions was performed. Application of 100 and 200 mmol L-1 NaCl at GSS was significantly accompanied by the change in abundance (>2-fold) of 97 and 75 proteins, respectively. Most of these proteins were involved in three major functions, namely stress response and defense, protein turnover and protection and primary metabolism. Our results pave the way towards the identification of suitable biomarkers useful for improving salt tolerance in soybean. |
HostingRepository | PRIDE |
AnnounceDate | 2015-04-07 |
AnnouncementXML | Submission_2016-03-31_01:29:52.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | riccardo zenezini |
SpeciesList | scientific name: Glycine max (Soybean) (Glycine hispida); NCBI TaxID: 3847; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-03-17 02:24:03 | ID requested | |
1 | 2015-04-07 05:56:59 | announced | |
⏵ 2 | 2016-03-31 01:29:53 | announced | Updated publication reference for PubMed record(s): 26969838. |
Publication List
Fercha A, Capriotti AL, Caruso G, Cavaliere C, Stampachiacchiere S, Zenezini Chiozzi R, Lagan, à A, Shotgun proteomic analysis of soybean embryonic axes during germination under salt stress. Proteomics, 16(10):1537-46(2016) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Glycine max (L.) Merrill, embryonic axis, salt tolerance, gel-free proteomics, label-free quantification, biomarkers |
Contact List
Aldo Laganà |
contact affiliation | Department of Chemistry, Sapienza Università di Roma, Piazzale Aldo Moro 5, 00185 Rome, Italy |
contact email | aldo.lagana@uniroma1.it |
lab head | |
riccardo zenezini |
contact affiliation | university la Sapienza, Roma |
contact email | riccardo.zenezini@uniroma1.it |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/04/PXD001943 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD001943
- Label: PRIDE project
- Name: Shotgun proteomic analysis of embryonic axis of soybean seeds during germination under salt stress