PXD001943

PXD001943 is an original dataset announced via ProteomeXchange.

Title	Shotgun proteomic analysis of embryonic axis of soybean seeds during germination under salt stress
Description	Salinity is one of the main environmental stresses worldwide limiting soybean growth and yield. Seed imbibition and radical emergence are generally less affected by salinity in soybean. Towards unraveling the mechanisms underlying salt tolerance in soybean at germination stage, a comprehensive quantitative proteomic analysis of proteins from soybean embryonic axis during germination sensu stricto (GSS) under saline conditions was performed. Application of 100 and 200 mmol L-1 NaCl at GSS was significantly accompanied by the change in abundance (>2-fold) of 97 and 75 proteins, respectively. Most of these proteins were involved in three major functions, namely stress response and defense, protein turnover and protection and primary metabolism. Our results pave the way towards the identification of suitable biomarkers useful for improving salt tolerance in soybean.
HostingRepository	PRIDE
AnnounceDate	2015-04-07
AnnouncementXML	Submission_2016-03-31_01:29:52.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	riccardo zenezini
SpeciesList	scientific name: Glycine max (Soybean) (Glycine hispida); NCBI TaxID: 3847;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2015-03-17 02:24:03	ID requested
1	2015-04-07 05:56:59	announced
⏵ 2	2016-03-31 01:29:53	announced	Updated publication reference for PubMed record(s): 26969838.

Fercha A, Capriotti AL, Caruso G, Cavaliere C, Stampachiacchiere S, Zenezini Chiozzi R, Lagan, à A, Shotgun proteomic analysis of soybean embryonic axes during germination under salt stress. Proteomics, 16(10):1537-46(2016) [pubmed]

curator keyword: Biological

submitter keyword: Glycine max (L.) Merrill, embryonic axis, salt tolerance, gel-free proteomics, label-free quantification, biomarkers

Aldo Laganà
contact affiliation	Department of Chemistry, Sapienza Università di Roma, Piazzale Aldo Moro 5, 00185 Rome, Italy
contact email	aldo.lagana@uniroma1.it
lab head
riccardo zenezini
contact affiliation	university la Sapienza, Roma
contact email	riccardo.zenezini@uniroma1.it
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/04/PXD001943

PRIDE project URI

• PRIDE
  1. PXD001943
     1. Label: PRIDE project
     2. Name: Shotgun proteomic analysis of embryonic axis of soybean seeds during germination under salt stress