PXD001860-1

PXD001860 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	PNNL Biodiversity Library - Microbial Section
Description	A collection of MS/MS data 112 microbial species. #BiodiversityLibrary
HostingRepository	MassIVE
AnnounceDate	2015-03-02
AnnouncementXML	Submission_2015-03-02_15:03:14.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Sam Payne
SpeciesList	scientific name: Acidiphilium cryptum JF-5; NCBI TaxID: 349163; scientific name: Actinosynnema mirum DSM 43827; NCBI TaxID: 446462; scientific name: Anabaena variabilis; NCBI TaxID: 1172; scientific name: Anaeromyxobacter dehalogenans; NCBI TaxID: 161493; scientific name: Anaplasma phagocytophilum; NCBI TaxID: 948; scientific name: Arthrobacter sp. FB24; NCBI TaxID: 290399; scientific name: Bacillus anthracis str. Ames; NCBI TaxID: 198094; scientific name: Bacillus anthracis str. Sterne; NCBI TaxID: 260799; scientific name: Bacillus subtilis subsp. subtilis str. 168; NCBI TaxID: 224308; scientific name: Bartonella henselae str. Houston-1; NCBI TaxID: 283166; scientific name: Borrelia burgdorferi B31; NCBI TaxID: 224326; scientific name: Brachybacterium faecium DSM 4810; NCBI TaxID: 446465; scientific name: Burkholderia mallei; NCBI TaxID: 13373; scientific name: Candidatus Chloracidobacterium thermophilum; NCBI TaxID: 458033; scientific name: Caulobacter crescentus CB15; NCBI TaxID: 190650; scientific name: Cellulomonas flavigena DSM 20109; NCBI TaxID: 446466; scientific name: Cenarchaeum symbiosum; NCBI TaxID: 46770; scientific name: Chlorobaculum tepidum; NCBI TaxID: 1097; scientific name: Chloroflexus aurantiacus; NCBI TaxID: 1108; scientific name: Clostridium thermocellum; NCBI TaxID: 1515; scientific name: Cryptobacterium curtum DSM 15641; NCBI TaxID: 469378; scientific name: Synechocystis sp. PCC 6803; NCBI TaxID: 1148; scientific name: Cyanothece sp. ATCC 51142; NCBI TaxID: 43989; scientific name: Cyanothece sp. ATCC 51472; NCBI TaxID: 860575; scientific name: Cyanothece sp. PCC 7424; NCBI TaxID: 65393; scientific name: Cyanothece sp. PCC 7425; NCBI TaxID: 395961; scientific name: Cyanothece sp. PCC 7822; NCBI TaxID: 497965; scientific name: Cyanothece sp. PCC 8801; NCBI TaxID: 41431; scientific name: Cyanothece sp. PCC 8802; NCBI TaxID: 395962; scientific name: Dehalococcoides ethenogenes 195; NCBI TaxID: 243164; scientific name: Deinococcus radiodurans R1; NCBI TaxID: 243230; scientific name: delta proteobacterium NaphS2; NCBI TaxID: 88274; scientific name: Desulfovibrio desulfuricans; NCBI TaxID: 876; scientific name: Desulfovibrio desulfuricans ND132; NCBI TaxID: 641491; scientific name: Desulfovibrio vulgaris str. Hildenborough; NCBI TaxID: 882; scientific name: Dethiosulfovibrio peptidovorans DSM 11002; NCBI TaxID: 469381; scientific name: Ehrlichia chaffeensis; NCBI TaxID: 945; scientific name: Enterobacter cloacae SCF1; NCBI TaxID: 701347; scientific name: Escherichia coli BL21; NCBI TaxID: 511693; scientific name: Escherichia coli str. K-12 substr. MG1655; NCBI TaxID: 511145; scientific name: escherichia coli rk4353; scientific name: Fibrobacter succinogenes subsp. succinogenes S85; NCBI TaxID: 59374; scientific name: Geobacter bemidjiensis Bem; NCBI TaxID: 404380; scientific name: Geobacter metallireducens GS-15; NCBI TaxID: 269799; scientific name: Geobacter sulfurreducens PCA; NCBI TaxID: 243231; scientific name: Geobacter uraniireducens; NCBI TaxID: 351604; scientific name: Haloferax volcanii; NCBI TaxID: 2246; scientific name: Halogeometricum borinquense DSM 11551; NCBI TaxID: 469382; scientific name: Halorhabdus utahensis DSM 12940; NCBI TaxID: 519442; scientific name: Heliobacterium modesticaldum; NCBI TaxID: 35701; scientific name: Kineococcus radiotolerans SRS30216; NCBI TaxID: 266940; scientific name: Kosmotoga olearia TBF 19.5.1; NCBI TaxID: 521045; scientific name: Methanosarcina barkeri; NCBI TaxID: 2208; scientific name: Methanospirillum hungatei JF-1; NCBI TaxID: 323259; scientific name: Methylophilales bacterium HTCC2181; NCBI TaxID: 383631; scientific name: Mycobacterium tuberculosis H37Rv; NCBI TaxID: 83332; scientific name: Nakamurella multipartita DSM 44233; NCBI TaxID: 479431; scientific name: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111; NCBI TaxID: 446468; scientific name: Novosphingobium aromaticivorans; NCBI TaxID: 48935; scientific name: Diplosphaera colitermitum TAV2; NCBI TaxID: 278957; scientific name: Candidatus Pelagibacter ubique HTCC1062; NCBI TaxID: 335992; scientific name: Pelobacter carbinolicus DSM 2380; NCBI TaxID: 338963; scientific name: Prochlorococcus marinus subsp. pastoris str. CCMP1986; NCBI TaxID: 59919; scientific name: Pseudomonas aeruginosa PAO1; NCBI TaxID: 208964; scientific name: Pseudomonas fluorescens Pf0-1; NCBI TaxID: 205922; scientific name: Pseudonocardia sp.; NCBI TaxID: 60912; scientific name: Ralstonia pickettii; NCBI TaxID: 329; scientific name: Rhodobacter capsulatus SB 1003; NCBI TaxID: 272942; scientific name: Rhodobacter sphaeroides 2.4.1; NCBI TaxID: 272943; scientific name: Rhodopseudomonas palustris; NCBI TaxID: 1076; scientific name: Roseiflexus castenholzii; NCBI TaxID: 120962; scientific name: Saccharomonospora viridis DSM 43017; NCBI TaxID: 471857; scientific name: Salmonella enterica subsp. enterica serovar Typhi str. Ty2; NCBI TaxID: 209261; scientific name: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S; NCBI TaxID: 588858; scientific name: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; NCBI TaxID: 99287; scientific name: Sanguibacter keddieii DSM 10542; NCBI TaxID: 446469; scientific name: Shewanella amazonensis SB2B; NCBI TaxID: 326297; scientific name: Shewanella baltica OS155; NCBI TaxID: 325240; scientific name: Shewanella baltica OS185; NCBI TaxID: 402882; scientific name: Shewanella baltica OS195; NCBI TaxID: 399599; scientific name: Shewanella baltica OS223; NCBI TaxID: 407976; scientific name: Shewanella denitrificans OS217; NCBI TaxID: 318161; scientific name: Shewanella frigidimarina NCIMB 400; NCBI TaxID: 318167; scientific name: Shewanella loihica PV-4; NCBI TaxID: 323850; scientific name: Shewanella oneidensis MR-1; NCBI TaxID: 211586; scientific name: Shewanella putrefaciens 200; NCBI TaxID: 399804; scientific name: Shewanella putrefaciens CN-32; NCBI TaxID: 319224; scientific name: Shewanella sp. W3-18-1; NCBI TaxID: 351745; scientific name: Shewanella sp. ANA-3; NCBI TaxID: 94122; scientific name: Shewanella sp. MR-4; NCBI TaxID: 60480; scientific name: Shewanella sp. MR-7; NCBI TaxID: 60481; scientific name: Sinorhizobium medicae; NCBI TaxID: 110321; scientific name: Sinorhizobium meliloti 1021; NCBI TaxID: 266834; scientific name: Slackia heliotrinireducens DSM 20476; NCBI TaxID: 471855; scientific name: Stackebrandtia nassauensis DSM 44728; NCBI TaxID: 446470; scientific name: Sulfolobus acidocaldarius DSM 639; NCBI TaxID: 330779; scientific name: Synechococcus sp. PCC 7002; NCBI TaxID: 32049; scientific name: Syntrophobacter fumaroxidans; NCBI TaxID: 119484; scientific name: Thermobispora bispora DSM 43833; NCBI TaxID: 469371; scientific name: Thermosynechococcus elongatus BP-1; NCBI TaxID: 197221; scientific name: Thermosynechococcus sp. NK55a; scientific name: Thermotoga maritima; NCBI TaxID: 2336; scientific name: Thiocapsa marina; NCBI TaxID: 244573; scientific name: Opitutaceae bacterium TAV1; NCBI TaxID: 278956; scientific name: Opitutaceae bacterium TAV5; NCBI TaxID: 794903; scientific name: Xylanimonas cellulosilytica DSM 15894; NCBI TaxID: 446471; scientific name: Yersinia enterocolitica; NCBI TaxID: 630; scientific name: Yersinia pestis CO92; NCBI TaxID: 214092; scientific name: Yersinia pestis KIM10+; NCBI TaxID: 187410; scientific name: Yersinia pseudotuberculosis IP 32953; NCBI TaxID: 273123; scientific name: Yersinia pseudotuberculosis PB1/+; NCBI TaxID: 502801;
ModificationList	Oxidation
Instrument	LTQ; LTQ FT; LTQ Orbitrap; LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2015-03-02 14:33:04	ID requested
⏵ 1	2015-03-02 15:03:15	announced

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: Biodiversity Library data from microbes

submitter keyword: Biodiversity Library data from microbes

Contact List

Sam Payne
lab head
Sam Payne
contact affiliation	UCSD
contact email	samuel.payne@pnnl.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://MSV000079053:a@massive.ucsd.edu

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://MSV000079053:a@massive.ucsd.edu