PXD001508 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Metaproteomic analysis of a mixed microbial communities extracted from biogas plant sludge |
Description | In this study, centrifugal fractionation has been applied for fractionation of two biogas sludge samples to analyze proteins extracted from (i) crude fibers, (ii) suspended microorganisms, and (iii) secreted proteins in the supernatant using a gel-based approach followed by LC-MS/MS identification. |
HostingRepository | PRIDE |
AnnounceDate | 2015-07-21 |
AnnouncementXML | Submission_2015-07-21_09:15:50.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Fabian Kohrs |
SpeciesList | scientific name: Zea mays (Maize); NCBI TaxID: 4577; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2014-11-18 06:11:11 | ID requested | |
⏵ 1 | 2015-07-21 09:15:52 | announced | |
Publication List
Kohrs F, Wolter S, Benndorf D, Heyer R, Hoffmann M, Rapp E, Bremges A, Sczyrba A, Schl, ü, ter A, Reichl U, Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities. Proteomics, 15(20):3585-9(2015) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Metaproteomics, Biogas plant, Microbial communities, Differential centrifugation, Metabolism |
Contact List
Dr. Dirk Benndorf |
contact affiliation | Bioprocess Engineering, Otto von Guericke University Magdeburg, Universitätsplatz 2, D-39106 Magdeburg, Germany |
contact email | benndorf@mpi-magdeburg.mpg.de |
lab head | |
Fabian Kohrs |
contact affiliation | Otto von Guericke University Magdeburg, Germany |
contact email | kohrs@mpi-magdeburg.mpg.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/07/PXD001508 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD001508
- Label: PRIDE project
- Name: Metaproteomic analysis of a mixed microbial communities extracted from biogas plant sludge