PXD001508

PXD001508 is an original dataset announced via ProteomeXchange.

Title	Metaproteomic analysis of a mixed microbial communities extracted from biogas plant sludge
Description	In this study, centrifugal fractionation has been applied for fractionation of two biogas sludge samples to analyze proteins extracted from (i) crude fibers, (ii) suspended microorganisms, and (iii) secreted proteins in the supernatant using a gel-based approach followed by LC-MS/MS identification.
HostingRepository	PRIDE
AnnounceDate	2015-07-21
AnnouncementXML	Submission_2015-07-21_09:15:50.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Fabian Kohrs
SpeciesList	scientific name: Zea mays (Maize); NCBI TaxID: 4577;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2014-11-18 06:11:11	ID requested
⏵ 1	2015-07-21 09:15:52	announced

Kohrs F, Wolter S, Benndorf D, Heyer R, Hoffmann M, Rapp E, Bremges A, Sczyrba A, Schl, ü, ter A, Reichl U, Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities. Proteomics, 15(20):3585-9(2015) [pubmed]

curator keyword: Biological

submitter keyword: Metaproteomics, Biogas plant, Microbial communities, Differential centrifugation, Metabolism

Dr. Dirk Benndorf
contact affiliation	Bioprocess Engineering, Otto von Guericke University Magdeburg, Universitätsplatz 2, D-39106 Magdeburg, Germany
contact email	benndorf@mpi-magdeburg.mpg.de
lab head
Fabian Kohrs
contact affiliation	Otto von Guericke University Magdeburg, Germany
contact email	kohrs@mpi-magdeburg.mpg.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/07/PXD001508

PRIDE project URI

• PRIDE
  1. PXD001508
     1. Label: PRIDE project
     2. Name: Metaproteomic analysis of a mixed microbial communities extracted from biogas plant sludge