PXD001497 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteome Analysis of Actinoplanes sp. SE50/110 |
Description | The acarviose metabolite acarbose is an a glucosidase inhibitor produced by Actinoplanes sp. SE50/110. It is medically important because it is used in the treatment of type 2 diabetes. In this work a comprehensive proteome analysis of Actinoplanes sp. SE50/110 was carried out. The associated txt and RAW files were used for two different analyses and publications. While one study focused on a comparative analysis of Actinoplanes sp. SE50/110 to elucidate differences in the proteome cultures that were grown with either maltose or glucose, the other study applied spectral counting and analyzed only the maltose-grown cultures to determine the major proteins and their location in the cell. The txt files for the comparative data are labeled as "heavy_light" and of the spectral counting data as "light". Both datasets were derived from the same RAW files. |
HostingRepository | PRIDE |
AnnounceDate | 2015-10-21 |
AnnouncementXML | Submission_2015-10-21_03:45:25.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Andreas Otto |
SpeciesList | scientific name: Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110); NCBI TaxID: 134676; |
ModificationList | No PTMs are included in the dataset |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2014-11-17 02:19:27 | ID requested | |
⏵ 1 | 2015-10-21 03:45:26 | announced | |
2 | 2015-11-30 04:31:06 | announced | Updated publication reference for PubMed record(s): 26597626, 25896738. |
Publication List
Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Walter F, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, P, ΓΌ, hler A, Comprehensive proteome analysis of Actinoplanes sp. SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster. J Proteomics, 125():1-16(2015) [pubmed] |
Keyword List
curator keyword: Biomedical |
submitter keyword: Actinoplanes sp. SE50/110 |
Contact List
Andreas Otto |
contact affiliation | Andreas Otto, Institute for Microbiology, Ernst-Moritz-Arndt-University of Greifswald, F.-L. Jahnstrasse 15, 17489 Greifswald, Germany |
contact email | andreas.otto@uni-greifswald.de |
lab head | |
Andreas Otto |
contact affiliation | Institute for Microbiology |
contact email | andreas.otto@uni-greifswald.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD001497
- Label: PRIDE project
- Name: Proteome Analysis of Actinoplanes sp. SE50/110