PXD000629-2
PXD000629 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomics analysis of B. bigemina |
Description | Protein from B. bigemina PR cell lysates was analysed by 1D SDS PAGE and in solution digestion. Digested peptides were analysed by on-line nanoflow liquid chromatography using the nanoACQUITY-nLC system (Waters MS technologies, Manchester, UK) coupled to an LTQ-Orbitrap Velos (ThermoFisher Scientific, Bremen, Germany). Collected data were then analysed by Mascot (version 2.3.02, Matrix Science) and Progenesis LC–MS (version 4.1, Nonlinear Dynamics, UK). |
HostingRepository | PRIDE |
AnnounceDate | 2014-07-28 |
AnnouncementXML | Submission_2014-07-28_00:52:03.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD000629 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Dong Xia |
SpeciesList | scientific name: Babesia bigemina; NCBI TaxID: 5866; scientific name: Babesia sp.; NCBI TaxID: 35084; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap; instrument model: LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2013-12-09 09:05:09 | ID requested | |
1 | 2014-06-16 03:20:43 | announced | |
⏵ 2 | 2014-07-28 00:52:04 | announced | Updated project metadata. |
Publication List
Jackson AP, Otto TD, Darby A, Ramaprasad A, Xia D, Echaide IE, Farber M, Gahlot S, Gamble J, Gupta D, Gupta Y, Jackson L, Malandrin L, Malas TB, Moussa E, Nair M, Reid AJ, Sanders M, Sharma J, Tracey A, Quail MA, Weir W, Wastling JM, Hall N, Willadsen P, Lingelbach K, Shiels B, Tait A, Berriman M, Allred DR, Pain A, The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction. Nucleic Acids Res, 42(11):7113-31(2014) [pubmed] |
Keyword List
submitter keyword: B. bigemina, 1D SDS PAGE, Label Free |
Contact List
Dong Xia | |
---|---|
contact affiliation | University of Liverpool |
contact email | d.xia@liv.ac.uk |
dataset submitter |
Full Dataset Link List
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000629 |
PRIDE project URI |
Repository Record List
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