PXD000629

PXD000629 is an original dataset announced via ProteomeXchange.

Title	Proteomics analysis of B. bigemina
Description	Protein from B. bigemina PR cell lysates was analysed by 1D SDS PAGE and in solution digestion. Digested peptides were analysed by on-line nanoflow liquid chromatography using the nanoACQUITY-nLC system (Waters MS technologies, Manchester, UK) coupled to an LTQ-Orbitrap Velos (ThermoFisher Scientific, Bremen, Germany). Collected data were then analysed by Mascot (version 2.3.02, Matrix Science) and Progenesis LC–MS (version 4.1, Nonlinear Dynamics, UK).
HostingRepository	PRIDE
AnnounceDate	2014-07-28
AnnouncementXML	Submission_2014-07-28_00:52:03.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000629
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Dong Xia
SpeciesList	scientific name: Babesia bigemina; NCBI TaxID: 5866; scientific name: Babesia sp.; NCBI TaxID: 35084;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap; instrument model: LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2013-12-09 09:05:09	ID requested
1	2014-06-16 03:20:43	announced
⏵ 2	2014-07-28 00:52:04	announced	Updated project metadata.

Jackson AP, Otto TD, Darby A, Ramaprasad A, Xia D, Echaide IE, Farber M, Gahlot S, Gamble J, Gupta D, Gupta Y, Jackson L, Malandrin L, Malas TB, Moussa E, Nair M, Reid AJ, Sanders M, Sharma J, Tracey A, Quail MA, Weir W, Wastling JM, Hall N, Willadsen P, Lingelbach K, Shiels B, Tait A, Berriman M, Allred DR, Pain A, The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction. Nucleic Acids Res, 42(11):7113-31(2014) [pubmed]

submitter keyword: B. bigemina, 1D SDS PAGE, Label Free

Dong Xia
contact affiliation	University of Liverpool
contact email	d.xia@liv.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/06/PXD000629

PRIDE project URI

• PRIDE
  1. PXD000629
     1. Label: PRIDE project
     2. Name: Proteomics analysis of B. bigemina