PXD000395-1

PXD000395 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Chromosome 11-Centric Human Proteome Project
Description	For the analysis of chromosome 11-centric human proteome, we analyzed the human brain hippocampal proteome. The samples from brain tissues were extensively off-gel fractionated by 12 fractions and analyzed by a high resolution mass spectrometer, Orbitrap XL ETD with collision induced dissociation, after LC separation using C18 column.
HostingRepository	PRIDE
AnnounceDate	2016-10-10
AnnouncementXML	Submission_2016-10-10_09:37:05.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000395
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Kyung-Hoon Kwon
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	instrument model: LTQ-Orbitrap XL ETD

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2013-08-02 03:10:32	ID requested
⏵ 1	2016-10-10 09:37:07	announced

Publication List

Hwang H, Park GW, Kim KH, Lee JY, Lee HK, Ji ES, Park SK, Xu T, Yates JR, Kwon KH, Park YM, Lee HJ, Paik YK, Kim JY, Yoo JS, Chromosome-Based Proteomic Study for Identifying Novel Protein Variants from Human Hippocampal Tissue Using Customized neXtProt and GENCODE Databases. J Proteome Res, 14(12):5028-37(2015) [pubmed]

Hwang H, Park GW, Kim KH, Lee JY, Lee HK, Ji ES, Park SK, Xu T, Yates JR, Kwon KH, Park YM, Lee HJ, Paik YK, Kim JY, Yoo JS, Chromosome-Based Proteomic Study for Identifying Novel Protein Variants from Human Hippocampal Tissue Using Customized neXtProt and GENCODE Databases. J Proteome Res, 14(12):5028-37(2015) [pubmed]

Keyword List

ProteomeXchange project tag: Human Proteome Project
submitter keyword: chromosome 11, Human Brain Hippocampus tissues, PE fraction, OFFGEL Fractionation

ProteomeXchange project tag: Human Proteome Project

submitter keyword: chromosome 11, Human Brain Hippocampus tissues, PE fraction, OFFGEL Fractionation

Contact List

Jinyoung Kim
contact affiliation	Korea Basic Science Institute
contact email	jinyoung@kbsi.re.kr
lab head
Kyung-Hoon Kwon
contact affiliation	Division of Mass Spectrometry Research
contact email	khoon62@hanmail.net
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/10/PXD000395
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/10/PXD000395

PRIDE project URI

Repository Record List

[ + ]