PXD000324-1
PXD000324 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Signatures for Mass Spectrometry Data Quality, part 5 of 5 |
Description | Logistic regression classification models were fit to manually classified quality control (QC) LC-MS/MS datasets to develop a model that can predict whether a dataset is in or out of control. Model parameters were optimized by minimizing a loss function that accounts for the tradeoff between false positive and false negative errors. In addition to the 1152 training/testing datasets, we are including 2662 additional datasets, all of the same QC sample (whole cell lysate of Shewanella oneidensis). Datasets originate from 6 Thermo instrument platforms: Exactive, LTQ, VelosPro, Orbitrap, Q-Exactive, and Velos Orbitrap. |
HostingRepository | PRIDE |
AnnounceDate | 2013-10-05 |
AnnouncementXML | Submission_2013-10-04_20:03:52.xml |
DigitalObjectIdentifier | |
ReviewLevel | Non peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Matthew Monroe |
SpeciesList | scientific name: Shewanella oneidensis (strain MR-1); NCBI TaxID: 211586; |
ModificationList | Oxidation |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2013-07-04 08:17:14 | ID requested | |
⏵ 1 | 2013-10-04 20:04:02 | announced | |
2 | 2014-03-21 09:11:11 | announced | Updated publication reference for PubMed record(s): 24611607. |
3 | 2014-07-25 01:20:12 | announced | Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: quality control, QC, data quality, metrics, Quameter |
Contact List
Matthew Monroe | |
---|---|
contact affiliation | Pacific Northwest National Laboratory |
contact email | matthew.monroe@pnnl.gov |
Full Dataset Link List
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/10/PXD000324 |