PXD000264 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Temperature-dependent Proteome Study of Thermoanaerobacter tengcongensis |
Description | Comprehensive and quantitative information of the thermophile proteome is an important source for understanding of the survival mechanism under high growth temperature. Thermoanaerobacter tengcongensis (T. tengcongensis), a typical anaerobic thermophilic eubacterium, was selected to quantitatively evaluate its protein abundance changes in response to four different temperatures. Thermoanaerobacter tengcongensis proteins were trypsine digested, separated with high-pH RP, and identified with MS/MS analysis. The raw MS/MS data were converted into MGF format by Proteome Discoverer 1.2 (Thermo Fisher Scientific, Waltham, MA, USA). And the exported MGF files were searched by Mascot 2.3.02 (Matrix Science, Boston, MA, USA) against the database with all 2588 predicted proteins in T. tengcongensis downloaded from NCBI (NCBI reference sequence: NC_003869.1). An automatic decoy database search was performed. Several parameters in Mascot were set for peptide searching, tolerance of one missed cleavage of trypsin, Carbamidomethyl (C),iTRAQ8plex (K) and iTRAQ8plex (N-term) as fixed modification, iTRAQ8plex (Y),Oxidation (M) as variable modification. The precursor mass tolerance was 10 ppm, and the product ion tolerance was 0.02 Da. |
HostingRepository | PRIDE |
AnnounceDate | 2013-08-20 |
AnnouncementXML | Submission_2013-08-20_08:13:46.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD000264 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Bo Wen |
SpeciesList | scientific name: Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Caldanaerobacter subterraneus subsp. tengcongensis); NCBI TaxID: 273068; |
ModificationList | iTRAQ8plex-116 reporter+balance reagent acylated residue; monohydroxylated residue; neutral loss: 63.998285; iodoacetamide derivatized residue |
Instrument | orbitrap; orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2013-05-22 03:48:44 | ID requested | |
1 | 2013-08-13 11:17:02 | announced | |
1 | 2014-07-28 00:38:23 | announced | |
⏵ 2 | 2013-08-20 08:13:46 | announced | Add reference |
Publication List
Chen Z, Wen B, Wang Q, Tong W, Guo J, Bai X, Zhao J, Sun Y, Tang Q, Lin Z, Lin L, Liu S, Quantitative proteomics reveals the temperature-dependent proteins encoded by a series of cluster genes in thermoanaerobacter tengcongensis. Mol Cell Proteomics, 12(8):2266-77(2013) [pubmed] |
Keyword List
submitter keyword: TTE, MS/MS, iTRAQ |
Contact List
Bo Wen |
contact affiliation | BGI-Shenzhen |
contact email | wenbo@genomics.cn |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/08/PXD000264 |
Repository Record List
[ + ]
[ - ]
- PRIDE
- 29557
- InstrumentRef: INSTRUMENT_1
- Label: bio_2_tec_1
- ModificationList: iTRAQ8plex-116 reporter+balance reagent acylated residue, monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
- Name: biological replicate 2, technical replicate 1
- PublicationRef: PMID23665590
- 29553
- InstrumentRef: INSTRUMENT_2
- Label: bio_1_tec_1
- ModificationList: iTRAQ8plex-116 reporter+balance reagent acylated residue, monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
- Name: biological replicate 1, technical replicate 1
- PublicationRef: PMID23665590
- 29558
- InstrumentRef: INSTRUMENT_2
- Label: bio_2_tec_2
- ModificationList: iTRAQ8plex-116 reporter+balance reagent acylated residue, monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
- Name: biological replicate 2, technical replicate 2
- PublicationRef: PMID23665590
- 29555
- InstrumentRef: INSTRUMENT_2
- Label: bio_1_tec_3
- ModificationList: iTRAQ8plex-116 reporter+balance reagent acylated residue, monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
- Name: biological replicate 1, technical replicate 3
- PublicationRef: PMID23665590
- 29559
- InstrumentRef: INSTRUMENT_2
- Label: bio_2_tec_3
- ModificationList: iTRAQ8plex-116 reporter+balance reagent acylated residue, monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
- Name: biological replicate 2, technical replicate 3
- PublicationRef: PMID23665590
- 29556
- InstrumentRef: INSTRUMENT_2
- Label: bio_1_tec_4
- ModificationList: iTRAQ8plex-116 reporter+balance reagent acylated residue, monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
- Name: biological replicate 1, technical replicate 4
- PublicationRef: PMID23665590
- 29554
- InstrumentRef: INSTRUMENT_2
- Label: bio_1_tec_2
- ModificationList: iTRAQ8plex-116 reporter+balance reagent acylated residue, monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
- Name: biological replicate 1, technical replicate 2
- PublicationRef: PMID23665590