PXD000091-6
PXD000091 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Human Chr18. 25 synthetic peptides for 21 proteins (Zgoda, et al.) |
| Description | Dataset QC0 was acquired to elaborate the transition groups for the proteotypic peptides of 21 human proteins encoded by chromosome 18. SRM-data was acquired using the synthetic peptide mixtures under the conditions of slight sample overloading on LC column. Preliminary transition groups were extracted from the results of MRM scouting of depleted plasma and liver and organized into 5 scheduled MRM assays named A to E with least overlapping of RT-window of proteotypic peptides. Decoy transitions were generated for each assay by ADD_RANDOM algorithm of mGen. |
| HostingRepository | PeptideAtlas |
| AnnounceDate | 2012-12-11 |
| AnnouncementXML | Submission_2012-12-11_11:42:38.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by respository |
| PrimarySubmitter | Aleksey Filimonov |
| SpeciesList | scientific name: Homo sapiens; NCBI TaxID: 9606; |
| ModificationList | No PTMs are included in the dataset |
| Instrument | Agilent 6410 Triple Quad |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2012-12-10 13:23:06 | ID requested | |
| 1 | 2012-12-10 17:21:02 | announced | |
| 2 | 2012-12-10 17:21:20 | announced | missing |
| 3 | 2012-12-10 17:21:36 | announced | missing |
| 4 | 2012-12-10 17:21:53 | announced | missing |
| 5 | 2012-12-10 17:22:22 | announced | missing |
| ⏵ 6 | 2012-12-10 17:27:52 | announced | missing |
| 7 | 2012-12-11 11:42:38 | announced | missing |
| 8 | 2014-03-12 13:28:11 | announced | update LabHead |
Publication List
| Zgoda, et al, "Chromosome 18 transcriptome profiling and targeted proteome mapping in depleted plasma, liver tissue and HepG2 cells", J Proteome Res, submitted |
Keyword List
| curator keyword: selected reaction monitoring, SRM, targeted |
Contact List
| Aleksey Filimonov | |
|---|---|
| contact role | Data submitter |
| contact email | filimonov.a.d@gmail.com |
| Aleksey Filimonov | |
| contact URL | |
| contact email | filimonov.a.d@gmail.com |
| role type | Principal investigator for project (as listed in PeptideAtlas) |
| contact organization | |
Full Dataset Link List
| PeptideAtlas dataset URI |
| PASSEL transition group browser URI |
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