PXD000021 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | D-score |
Description | Processing of the dataset of synthetic phosphopeptides by Savitzki et al. (MCP, 2011) using multiple search engines. Establishment of the D-score: a search engine independent MD-score. |
HostingRepository | PRIDE |
AnnounceDate | 2013-01-23 |
AnnouncementXML | Submission_2013-01-23_04:01:24.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD000021 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Lennart Martens |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | Oxidation: 15.994915; phosphorylated residue: 79.966331; Carbamidomethyl: 57.021464; 2-pyrrolidone-5-carboxylic acid (Gln): -17.026549; 2-pyrrolidone-5-carboxylic acid (Gln): -18.010565; acetylated residue: 42.010565 |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2012-09-03 02:31:29 | ID requested | |
⏵ 1 | 2013-01-23 03:06:56 | announced | |
⏵ 1 | 2014-07-28 00:20:02 | announced | |
2 | 2013-01-23 04:01:24 | announced | Add reference |
2 | 2017-06-21 00:30:25 | announced | Updated project metadata. |
3 | 2017-10-24 00:11:05 | announced | Updated project metadata. |
Publication List
Vaudel M, Breiter D, Beck F, Rahnenf, ΓΌ, hrer J, Martens L, Zahedi RP, D-score: a search engine independent MD-score. Proteomics, 13(6):1036-41(2013) [pubmed] |
Keyword List
submitter keyword: phosphorylation, synthetic peptides, localization score |
Contact List
Lennart Martens |
contact affiliation | Computational Omics and Systems Biology Group Department of Medical Protein Research Universiteit Gent - VIB, Gent, Belgium |
contact email | lennart.martens@UGent.be |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/01/PXD000021 |
Repository Record List
[ + ]
[ - ]
- PRIDE
- 27185
- InstrumentRef: INSTRUMENT_1
- Label: D-score ETD MO
- ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation,
- Name: D-score ETD Mascot OMSSA
- PublicationRef: PMID23307401
- 27198
- InstrumentRef: INSTRUMENT_1
- Label: D-score MSA X
- ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl, acetylated residue, 2-pyrrolidone-5-carboxylic acid (Gln), 2-pyrrolidone-5-carboxylic acid (Gln),
- Name: D-score MSA XTandem
- PublicationRef: PMID23307401
- 27187
- InstrumentRef: INSTRUMENT_1
- Label: D-score ETD O
- ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl,
- Name: D-score ETD OMSSA
- PublicationRef: PMID23307401
- 27193
- InstrumentRef: INSTRUMENT_1
- Label: D-score HCD X
- ModificationList: phosphorylated residue, 2-pyrrolidone-5-carboxylic acid (Gln), Oxidation, acetylated residue, 2-pyrrolidone-5-carboxylic acid (Gln), Carbamidomethyl,
- Name: D-score HCD XTandem
- PublicationRef: PMID23307401
- 27190
- InstrumentRef: INSTRUMENT_1
- Label: D-score HCD MO
- ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation,
- Name: D-score HCD Mascot OMSSA
- PublicationRef: PMID23307401
- 27186
- InstrumentRef: INSTRUMENT_1
- Label: D-score ETD MOX
- ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation, 2-pyrrolidone-5-carboxylic acid (Gln), 2-pyrrolidone-5-carboxylic acid (Gln), acetylated residue,
- Name: D-score ETD Mascot OMSSA XTandem
- PublicationRef: PMID23307401
- 27182
- InstrumentRef: INSTRUMENT_1
- Label: D-score CID O
- ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation,
- Name: D-score CID OMSSA
- PublicationRef: PMID23307401
- 27184
- InstrumentRef: INSTRUMENT_1
- Label: D-score ETD M
- ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl,
- Name: D-score ETD Mascot
- PublicationRef: PMID23307401
- 27188
- InstrumentRef: INSTRUMENT_1
- Label: D-score ETD X
- ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation, 2-pyrrolidone-5-carboxylic acid (Gln), acetylated residue, 2-pyrrolidone-5-carboxylic acid (Gln),
- Name: D-score ETD XTandem
- PublicationRef: PMID23307401
- 27180
- InstrumentRef: INSTRUMENT_1
- Label: D-score CID MO
- ModificationList: Oxidation, phosphorylated residue, Carbamidomethyl,
- Name: D-score CID Mascot OMSSA
- PublicationRef: PMID23307401
- 27196
- InstrumentRef: INSTRUMENT_1
- Label: D-score MSA MOX
- ModificationList: Oxidation, Carbamidomethyl, phosphorylated residue, 2-pyrrolidone-5-carboxylic acid (Gln), 2-pyrrolidone-5-carboxylic acid (Gln), acetylated residue,
- Name: D-score MSA Mascot OMSSA XTandem
- PublicationRef: PMID23307401
- 27179
- InstrumentRef: INSTRUMENT_1
- Label: D-score CID M
- ModificationList: Oxidation, phosphorylated residue, Carbamidomethyl,
- Name: D-score CID Mascot
- PublicationRef: PMID23307401
- 27191
- InstrumentRef: INSTRUMENT_1
- Label: D-score HCD MOX
- ModificationList: phosphorylated residue, 2-pyrrolidone-5-carboxylic acid (Gln), Carbamidomethyl, Oxidation, acetylated residue, 2-pyrrolidone-5-carboxylic acid (Gln),
- Name: D-score Mascot OMSSA XTandem
- PublicationRef: PMID23307401
- 27197
- InstrumentRef: INSTRUMENT_1
- Label: D-score MSA O
- ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl,
- Name: D-score MSA OMSSA
- PublicationRef: PMID23307401
- 27183
- InstrumentRef: INSTRUMENT_1
- Label: D-score CID X
- ModificationList: phosphorylated residue, 2-pyrrolidone-5-carboxylic acid (Gln), Carbamidomethyl, Oxidation, 2-pyrrolidone-5-carboxylic acid (Gln), acetylated residue,
- Name: D-score CID XTandem
- PublicationRef: PMID23307401
- 27189
- InstrumentRef: INSTRUMENT_1
- Label: D-score HCD M
- ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl,
- Name: D-score HCD Mascot
- PublicationRef: PMID23307401
- 27195
- InstrumentRef: INSTRUMENT_1
- Label: D-score MSA MO
- ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation,
- Name: D-score MSA Mascot OMSSA
- PublicationRef: PMID23307401
- 27194
- InstrumentRef: INSTRUMENT_1
- Label: D-score MSA M
- ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl,
- Name: D-score MSA Mascot
- PublicationRef: PMID23307401
- 27181
- InstrumentRef: INSTRUMENT_1
- Label: D-score CID MOX
- ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation, 2-pyrrolidone-5-carboxylic acid (Gln), 2-pyrrolidone-5-carboxylic acid (Gln), acetylated residue,
- Name: PD-score CID Mascot OMSSA XTandem
- PublicationRef: PMID23307401
- 27192
- InstrumentRef: INSTRUMENT_1
- Label: D-score HCD O
- ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl,
- Name: D-score HCD OMSSA
- PublicationRef: PMID23307401