PXD067382

PXD067382 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomics of Arabidopsis thaliana leaves after silencing of MKIP1 or uL4c
Description	Arabidopsis thaliana (Arabidopsis) MATURASE K INTERACTING PROTEIN1 (MKIP1) is a plastid-localized, non-canonical member of the starch-branching enzyme family. Inducible silencing of MKIP1 by estradiol-treatment results in pale newly emerged leaves. Here we analysed the proteome of these leaves from two independent plant lines by LC-MS/MS using data-independent acquisition. Estradiol-treated wild-type (Col-0) plants and a line in which the plastidial ribosomal subunit uL4c was silenced served as controls. Data was analysed using DIA-NN via the FragPipe platform.
HostingRepository	PRIDE
AnnounceDate	2026-02-10
AnnouncementXML	Submission_2026-02-10_06:52:36.828.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Barbara Pfister
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: NEWT:3702;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Exploris 480

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2025-08-15 01:45:02	ID requested
⏵ 1	2026-02-10 06:52:37	announced

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: Arabidopsis,LC-MS/MS, DIA, ribosome, chloroplast

submitter keyword: Arabidopsis,LC-MS/MS, DIA, ribosome, chloroplast

Contact List

Samuel C. Zeeman
contact affiliation	Plant Biochemistry group, Institute of Molecular Plant Biology, Department of Biology, ETH Zurich
contact email	szeeman@ethz.ch
lab head
Barbara Pfister
contact affiliation	ETH Zurich
contact email	bpfister@ethz.ch
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/02/PXD067382
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/02/PXD067382

PRIDE project URI

Repository Record List

[ + ]