PXD055139

PXD055139 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Label-free LC-MS proteomics of oral squamous cell carcinoma patients and healthy controls: proteomics
Description	This study compared serum proteomic expressions of 41 oral squamous cell carcinoma patients and 44 healthy controls. The data was acquired with UDMSE in resolution mode and targeted fragmentation with DIA. This project consist of two parallel projects: proteomic and N-glycopeptidomic projects. This is the proteomic project. Due to in-parallel N-glycoproteomic analysis the abundant serum proteins were included in the proteomics.
HostingRepository	PRIDE
AnnounceDate	2026-02-10
AnnouncementXML	Submission_2026-02-09_17:43:00.650.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD055139
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Sakari Joenväärä
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: NEWT:9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Synapt MS

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-08-23 08:36:23	ID requested
⏵ 1	2026-02-09 17:43:01	announced

Publication List

Tohmola T, Joenv, ä, ä, r, ä S, Dickinson A, M, ä, kitie A, Sil, é, n S, Disease-specific N-glycopeptides in serum of patients with oral squamous cell carcinoma. Sci Rep, 15(1):32276(2025) [pubmed]
10.1038/s41598-025-17339-w;
10.6019/PXD055139;

Tohmola T, Joenv, ä, ä, r, ä S, Dickinson A, M, ä, kitie A, Sil, é, n S, Disease-specific N-glycopeptides in serum of patients with oral squamous cell carcinoma. Sci Rep, 15(1):32276(2025) [pubmed]

10.1038/s41598-025-17339-w;

10.6019/PXD055139;

Keyword List

submitter keyword: OSCC, proteomics, mass spectrometry, human, serum

submitter keyword: OSCC, proteomics, mass spectrometry, human, serum

Contact List

Prof. Risto Renkonen
contact affiliation	1.Transplantation Laboratory, University of Helsinki, Helsinki, Finland. 2. HUS Diagnostic Center, Helsinki University Hospital, Helsinki, Finland
contact email	risto.renkonen@helsinki.fi
lab head
Sakari Joenväärä
contact affiliation	Helsinki University
contact email	sakari.joenvaara@helsinki.fi
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/02/PXD055139
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/02/PXD055139

PRIDE project URI

Repository Record List

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