PXD064526 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Proteome of E.coli BW25113 (wt and delta-argR) and LY177 across growth conditions |
| Description | Motivated to understand what causes the diffusion coefficient of a 40 nm particle in E.coli to vary across experimental conditions, we performed the quantification of this bacterium's proteome in those conditions. Specifically, we analyzed the BW25113 and BW25113_delta-argR strains (Baba et al 2006), as well as the LY177 strain (Stracy et al 2021), grown in M9 medium supplemented with either glucose, glucose and L-arginine, or glucose and casamino acids.
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Note: see "allSamples.txt" for a detailed description of each sample in this data set. |
| HostingRepository | PRIDE |
| AnnounceDate | 2026-04-02 |
| AnnouncementXML | Submission_2026-04-02_07:23:37.581.xml |
| DigitalObjectIdentifier | https://doi.org/10.6019/PXD064526 |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Jose Losa |
| SpeciesList | scientific name: Escherichia coli; NCBI TaxID: NEWT:562; |
| ModificationList | acetylated residue; monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue |
| Instrument | Orbitrap Exploris 480 |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2025-06-02 12:16:33 | ID requested | |
| ⏵ 1 | 2026-04-02 07:23:38 | announced | |
| 2 | 2026-04-13 01:26:43 | announced | 2026-04-13: Updated project metadata. |
Publication List
Keyword List
| submitter keyword: E.coli |
| growth conditions |
| COG-E proteins |
Contact List
| Matthias Heinemann |
|---|
| contact affiliation | Molecular Systems Biology,Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, The Netherlands |
| contact email | m.heinemann@rug.nl |
| lab head | |
| Jose Losa |
|---|
| contact affiliation | University of Groningen |
| contact email | j.p.vila.cha.losa@rug.nl |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/04/PXD064526 |
| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD064526
- Label: PRIDE project
- Name: Proteome of E.coli BW25113 (wt and delta-argR) and LY177 across growth conditions
