PXD056030

PXD056030 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Analysis of photosynthetic protein supercomplexes from Physcomitrella patens
Description	The goal of the project is to determine protein composition (and their relative abundance) of photosystem I and II supercomplexes separated using mild CN-PAGE from thylakoid membranes of Physcomitrium patens. The proteomic data will be compared with single-particle EM data obtained in the separated photosystem I and II supercomplexes.
HostingRepository	PRIDE
AnnounceDate	2025-05-07
AnnouncementXML	Submission_2025-05-07_02:58:05.048.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Pavel Roudnický
SpeciesList	scientific name: Physcomitrella patens subsp. patens (Moss); NCBI TaxID: 3218;
ModificationList	acetylated residue; monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	timsTOF Pro; Orbitrap Exploris 480

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-09-19 10:43:34	ID requested
⏵ 1	2025-05-07 02:58:05	announced

Publication List

10.1111/tpj.17116;
Opat, í, kov, á M, Kou, ř, il R, Unique structural attributes of the PSI-NDH supercomplex in Physcomitrium patens. Plant J, 120(5):2226-2237(2024) [pubmed]

10.1111/tpj.17116;

Opat, í, kov, á M, Kou, ř, il R, Unique structural attributes of the PSI-NDH supercomplex in Physcomitrium patens. Plant J, 120(5):2226-2237(2024) [pubmed]

Keyword List

submitter keyword: proteomics, Exploris, PSI, supercomplexes,Physcomitrium patens, PSII, timsTOF Pro

submitter keyword: proteomics, Exploris, PSI, supercomplexes,Physcomitrium patens, PSII, timsTOF Pro

Contact List

Zbynek Zdrahal
contact affiliation	Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic
contact email	zdrahal@sci.muni.cz
lab head
Pavel Roudnický
contact affiliation	Masaryk University
contact email	p.roudnicky@mail.muni.cz
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD056030
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD056030

PRIDE project URI

Repository Record List

[ + ]