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<ProteomeXchangeDataset xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" id="PXD053504" xsi:noNamespaceSchemaLocation="proteomeXchange-1.4.0.xsd" formatVersion="1.4.0">
  <CvList>
    <Cv id="MS" fullName="PSI-MS" uri="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-Cv/master/psi-ms.obo"/>
    <Cv id="MOD" fullName="PSI-MOD" uri="https://raw.githubusercontent.com/HUPO-PSI/psi-mod-CV/master/PSI-MOD.obo"/>
    <Cv id="UNIMOD" fullName="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo"/>
  </CvList>
  <DatasetSummary announceDate="2024-06-29" hostingRepository="jPOST" title="Plasma proteomic profiles of patients with HIV infection and coinfection with hepatitis B/C virus undergoing anti-retroviral therapy">
    <Description>Chronic liver disease is becoming a leading cause of illness and mortality in people living with human immunodeficiency virus (HIV) (PLWH) undergoing suppressive anti-retroviral therapy. Its main etiology has been reported to be coinfection with hepatitis B (HBV) and C (HCV) viruses. Accumulating evidence indicate chronic liver inflammation and fibrosis can potentially lead to the development of hepatocellular carcinoma (HCC). Therefore, monitoring of the disease progression in PLWH is required. The present study aimed to explore the plasma protein profiles of patients with HIV infection and those coinfected with HBV and HCV using shotgun proteomics. </Description>
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      <cvParam accession="MS:1001919" cvRef="MS" name="ProteomeXchange accession number" value="PXD053504"/>
      <cvParam accession="MS:1001921" cvRef="MS" name="ProteomeXchange accession number version number" value="1"/>
    </DatasetIdentifier>
    <DatasetIdentifier>
      <cvParam accession="MS:1002632" cvRef="MS" name="jPOST dataset identifier" value="JPST003189"/>
    </DatasetIdentifier>
  </DatasetIdentifierList>
  <DatasetOriginList>
    <DatasetOrigin>
      <cvParam cvRef="MS" accession="MS:1002868" name="Original data"/>
    </DatasetOrigin>
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  <SpeciesList>
    <Species>
      <cvParam cvRef="MS" accession="MS:1001469" name="taxonomy: scientific name" value="Homo sapiens (Human)"/>
      <cvParam cvRef="MS" accession="MS:1001467" name="taxonomy: NCBI TaxID" value="9606"/>
    </Species>
  </SpeciesList>
  <InstrumentList>
    <Instrument id="Instrument_1">
      <cvParam cvRef="MS" accession="MS:1000463" name="instrument"/>
    </Instrument>
  </InstrumentList>
  <ModificationList>
    <cvParam cvRef="MOD" accession="MOD:01060" name="S-carboxamidomethyl-L-cysteine"/>
    <cvParam cvRef="MOD" accession="MOD:00719" name="L-methionine sulfoxide"/>
  </ModificationList>
  <ContactList>
    <Contact id="project_submitter">
      <cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Sittiruk Roytrakul"/>
      <cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="BIOTEC"/>
      <cvParam cvRef="MS" accession="MS:1002037" name="dataset submitter"/>
    </Contact>
    <Contact id="project_lab_head">
      <cvParam cvRef="MS" accession="MS:1002332" name="lab head"/>
      <cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Chareeporn Akekawatchai"/>
    </Contact>
  </ContactList>
  <PublicationList>
    <Publication id="pending">
      <cvParam cvRef="MS" accession="MS:1002858" name="Dataset with its publication pending"/>
    </Publication>
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  <KeywordList>
    <cvParam cvRef="MS" accession="MS:1001925" name="submitter keyword" value="human immunodeficiency virus, people living with HIV, hepatitis B, hepatitis C, shotgun proteomics "/>
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  <FullDatasetLinkList>
    <FullDatasetLink>
      <cvParam accession="MS:1002633" cvRef="MS" name="jPOST dataset URI" value="https://repository.jpostdb.org/entry/JPST003189"/>
    </FullDatasetLink>
    <FullDatasetLink>
      <cvParam cvRef="MS" accession="MS:1002852" name="Dataset FTP location" value="ftp://ftp.jpostdb.org/JPST003189/"/>
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